Plant Circular RNA Database

Detail information of Zm00001d037362_circ_g.1

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d037362_circ_g.1
					

						ID in PlantcircBase
						zma_circ_009029
					

						Alias
						Zm06circ00052, GRMZM2G443881_C1
					

						Organism
						
							Zea mays						
					

						Position
						
							chr6: 122867098-122869504  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						CIRI2
					

						Parent gene
						
							Zm00001d037362						
					

						Parent gene annotation
						
							DNA topoisomerase type IA core
							
					

						Parent gene strand
						-
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, endosperm
					

						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d037362_T056:4
Zm00001d037362_T059:5
Zm00001d037362_T004:5
Zm00001d037362_T063:4
Zm00001d037362_T055:4
Zm00001d037362_T020:6
Zm00001d037362_T034:5
Zm00001d037362_T015:5
Zm00001d037362_T018:6
Zm00001d037362_T025:6
Zm00001d037362_T011:6
Zm00001d037362_T016:4
Zm00001d037362_T005:5
Zm00001d037362_T043:5
Zm00001d037362_T002:6
Zm00001d037362_T040:5
Zm00001d037362_T003:5
Zm00001d037362_T007:4
Zm00001d037362_T014:6
Zm00001d037362_T023:6
Zm00001d037362_T030:5
Zm00001d037362_T036:5
Zm00001d037362_T037:5
Zm00001d037362_T028:5
Zm00001d037362_T010:4
Zm00001d037362_T009:6
Zm00001d037362_T006:5
Zm00001d037362_T012:5
Zm00001d037362_T022:5
Zm00001d037362_T054:3
Zm00001d037362_T024:6
Zm00001d037362_T048:5
Zm00001d037362_T033:5
Zm00001d037362_T053:3
Zm00001d037362_T008:4
Zm00001d037362_T032:5
Zm00001d037362_T017:5
Zm00001d037362_T041:5
Zm00001d037362_T026:6
Zm00001d037362_T042:5
Zm00001d037362_T021:6
Zm00001d037362_T019:4
Zm00001d037362_T027:5
Zm00001d037362_T001:5
Zm00001d037362_T058:5
Zm00001d037362_T062:3
Zm00001d037362_T035:4
Zm00001d037362_T038:5
Zm00001d037362_T013:4

					

			
		

General Information
CircRNA Name	Zm00001d037362_circ_g.1
ID in PlantcircBase	zma_circ_009029
Alias	Zm06circ00052, GRMZM2G443881_C1
Organism	Zea mays
Position	chr6: 122867098-122869504 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	Zm00001d037362
Parent gene annotation	DNA topoisomerase type IA core
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d037362_T056:4 Zm00001d037362_T059:5 Zm00001d037362_T004:5 Zm00001d037362_T063:4 Zm00001d037362_T055:4 Zm00001d037362_T020:6 Zm00001d037362_T034:5 Zm00001d037362_T015:5 Zm00001d037362_T018:6 Zm00001d037362_T025:6 Zm00001d037362_T011:6 Zm00001d037362_T016:4 Zm00001d037362_T005:5 Zm00001d037362_T043:5 Zm00001d037362_T002:6 Zm00001d037362_T040:5 Zm00001d037362_T003:5 Zm00001d037362_T007:4 Zm00001d037362_T014:6 Zm00001d037362_T023:6 Zm00001d037362_T030:5 Zm00001d037362_T036:5 Zm00001d037362_T037:5 Zm00001d037362_T028:5 Zm00001d037362_T010:4 Zm00001d037362_T009:6 Zm00001d037362_T006:5 Zm00001d037362_T012:5 Zm00001d037362_T022:5 Zm00001d037362_T054:3 Zm00001d037362_T024:6 Zm00001d037362_T048:5 Zm00001d037362_T033:5 Zm00001d037362_T053:3 Zm00001d037362_T008:4 Zm00001d037362_T032:5 Zm00001d037362_T017:5 Zm00001d037362_T041:5 Zm00001d037362_T026:6 Zm00001d037362_T042:5 Zm00001d037362_T021:6 Zm00001d037362_T019:4 Zm00001d037362_T027:5 Zm00001d037362_T001:5 Zm00001d037362_T058:5 Zm00001d037362_T062:3 Zm00001d037362_T035:4 Zm00001d037362_T038:5 Zm00001d037362_T013:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAACATAGGCTGAGAAATATTTAAAAACCTCTGTCTCCATGTTAGCTGTAAAGTTGTAATCAGA
AACCTCAGAGAAATGGTGCAAAAGGAATGCCGAGACcttttgatcagaatcaggcatgacacca
agtaacctgggttcaaaagattttgcattttcttctatgggttcagtttcatcttcttgctgtg
acagtgag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTTGATCAGAATCAGGCATGACACCAAGTAACCTGGGTTCAAAAGATTTTGCATTTTCTTCT
ATGGGTTCAGTTTCATCTTCTTGCTGTGACAGTGAGCGAGCAATGTACCTACAGTAATTAGATC
TGTGATTAAGTATGATGATAATCATCAACAATCAAGAAATCAACTTGGAACTCATTAATACATA
ACAGGTGACAACGAAGAATATAACAAGTTTTTAAACTTCAAGGTATTAAAATTATACTGAGGGA
TAATAGGGTCATACTTGCATTTTGGATGTCGATCACAACCTACAAAATAGCCTTCACCGTACCT
ACTAACTTTGAATCTCAAGGTTCCTTCAGAACAACTGCATGTAATCCAGACATAAAAAAAGGCA
TCAAGAATTATGTATGTGAATGCATCGCAGTTTGATGATAGGTTAACCTGACTGGATATTGCAA
ATGTATTGATTTTGACATTCAATATCTACATTCCACAAAAGATACCTTAAAAGTACATTTGTCG
TCCATTACCTAGGGCAAATTCTACAATCCTTGTAAACATCGGAAAAGAGGATAGGACCAAATTT
TTCTTCAAGCATTCTCTCTACCTGTACAATGTCAAATTCAGTTTCAATCTCTAGCCGTTGCAGA
GTGATATGATACAAGGTACATCAAGAGTATCATTCTTGTGTATGACGGGTCGAACTCAGCAATT
CCATGCTAAAATGAAGCCTTCAGGCAATGTAACAATGCACTTTCTGCAGTAAGGCAGTTGAGCA
CTTCCCATCTTTGCCCCAAAAAGTGCTTAAATGCTTTCCCAAAAATATTTTGGAGCACTGTTTG
CAAAAATGTAGGGGGTCCAACCAGTATTATGTTGTGCTGGGAGTTACAATCAGTAGTTTCCCTT
TAATCCACTGACAACAATATTGTATAAAACCAAGAAGCATCAACAGAGAGAATAAAATATGATA
GCTCGTCATTTCACACGTTTTCCCTTCAAAGCAAATGCAAACTTGACCAGTTTCAGGTAATAAA
GGGCTATAGATAAGATTCTACCAAAGCAAAAGCCATCTACCACTACTTCGTACTTGAGAAATGG
ACCTGAAATATTTACTTCAGTTTCTGTGTCATTAAAAAAGGTTGATGACCACAACAACAAAGTT
TGAGTACCAAACAAGCTTGACAATCACACCAAGAGAACTACGAGAACTTGCATCATCAAGGAAC
CAGCATACTCAGGAATTAAATGCATCTTACCTTTCTGCCATCCAGTTTACTCACATCTGCACAA
TATTTGCTGAATCGTTCCCAGTAGTCTTTCAGAAGACCCTTCCATTCAGTTGACCCAGCAGAGA
CATTATCTAGCTATTATGTAAAAGAAAAGAAACTTCAACACAGTGTTAGTATAACCAACTATTT
TTTGTGCTAGCCTATTACTGAAAGATGTTCTTGTAAAAGGATCACTACCATTTTTCCCAAATGT
AGGTTGTTCTAGAGTGGTGCACAAAGATTAAGAAAGTAGGTTAAATGAACTTGTTCCCTCAATT
ATATAGTAAGGTGGGAAGTGGGAGTGATGGTTCATTAACTTATGAGTCACGTTATTCAGCAAGG
GCAACAAAGAAAGAGAACCTAAAAACGCCTACAAGTTTTTTATTGAATACGCAGGAGAGCTGCG
TATTAATATATTAAAAAGAGTAAAGAAGGTCCAAAGAGGACCAGGAACCAAGTCCAAAGCGTAC
AAGAACACTTCCATAGAAAACCAACTAGACCATTTTTTTCTCGAAAACGCAGGAGAACTGCGCC
TCAATATACTAAGAAGAAGAAATAAATAAAGGTCAAAGAGACCACACGAGCCAAACCTACCCTA
TGACAGTGAAAGGCTTTGGCGCCAGCTATAGCCCAAAGATTTATCCCCTCCCTAGCTGCCTGCT
GAGCAACCGCAAGGTTGGGAGCAAAGCCCTCAAAGACACATCTATTTATATGCTTCCAGATGAT
CCACGCACCCAGAATCACTAGGGACAAATTACTTGCATATAGAGAATAGTTAAGGCAAAATTGG
CCTATGCCTGGATAATAGACCAAAGCATTAAGTCCATGACAACAATCTTGAATTAGCTCCACAA
CTACAGACAGCAATGTTCCTAATGTCTTAAATCCAAGAATAATCATGAGCAAAATTAGAAGTGT
ACCAATGTCCATTGAGATGCTGATTTCCTGAATCCTCATATTGGTTTAACCCATAGCAGTGACC
ACTAACCAGGCAGCTTAAACAGGTTTCTAAAACTATGGCATAAACTGAAAACAAAGAAGCGCAC
AGAAAACATAGGCTGAGAAATATTTAAAAACCTCTGTCTCCATGTTAGCTGTAAAGTTGTAATC
AGAAACCTCAGAGAAATGGTGCAAAAGGAATGCCGAGAC
						
					

			
		

Sequences
Splice junction sequence	AAACATAGGCTGAGAAATATTTAAAAACCTCTGTCTCCATGTTAGCTGTAAAGTTGTAATCAGA AACCTCAGAGAAATGGTGCAAAAGGAATGCCGAGACcttttgatcagaatcaggcatgacacca agtaacctgggttcaaaagattttgcattttcttctatgggttcagtttcatcttcttgctgtg acagtgag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTTGATCAGAATCAGGCATGACACCAAGTAACCTGGGTTCAAAAGATTTTGCATTTTCTTCT ATGGGTTCAGTTTCATCTTCTTGCTGTGACAGTGAGCGAGCAATGTACCTACAGTAATTAGATC TGTGATTAAGTATGATGATAATCATCAACAATCAAGAAATCAACTTGGAACTCATTAATACATA ACAGGTGACAACGAAGAATATAACAAGTTTTTAAACTTCAAGGTATTAAAATTATACTGAGGGA TAATAGGGTCATACTTGCATTTTGGATGTCGATCACAACCTACAAAATAGCCTTCACCGTACCT ACTAACTTTGAATCTCAAGGTTCCTTCAGAACAACTGCATGTAATCCAGACATAAAAAAAGGCA TCAAGAATTATGTATGTGAATGCATCGCAGTTTGATGATAGGTTAACCTGACTGGATATTGCAA ATGTATTGATTTTGACATTCAATATCTACATTCCACAAAAGATACCTTAAAAGTACATTTGTCG TCCATTACCTAGGGCAAATTCTACAATCCTTGTAAACATCGGAAAAGAGGATAGGACCAAATTT TTCTTCAAGCATTCTCTCTACCTGTACAATGTCAAATTCAGTTTCAATCTCTAGCCGTTGCAGA GTGATATGATACAAGGTACATCAAGAGTATCATTCTTGTGTATGACGGGTCGAACTCAGCAATT CCATGCTAAAATGAAGCCTTCAGGCAATGTAACAATGCACTTTCTGCAGTAAGGCAGTTGAGCA CTTCCCATCTTTGCCCCAAAAAGTGCTTAAATGCTTTCCCAAAAATATTTTGGAGCACTGTTTG CAAAAATGTAGGGGGTCCAACCAGTATTATGTTGTGCTGGGAGTTACAATCAGTAGTTTCCCTT TAATCCACTGACAACAATATTGTATAAAACCAAGAAGCATCAACAGAGAGAATAAAATATGATA GCTCGTCATTTCACACGTTTTCCCTTCAAAGCAAATGCAAACTTGACCAGTTTCAGGTAATAAA GGGCTATAGATAAGATTCTACCAAAGCAAAAGCCATCTACCACTACTTCGTACTTGAGAAATGG ACCTGAAATATTTACTTCAGTTTCTGTGTCATTAAAAAAGGTTGATGACCACAACAACAAAGTT TGAGTACCAAACAAGCTTGACAATCACACCAAGAGAACTACGAGAACTTGCATCATCAAGGAAC CAGCATACTCAGGAATTAAATGCATCTTACCTTTCTGCCATCCAGTTTACTCACATCTGCACAA TATTTGCTGAATCGTTCCCAGTAGTCTTTCAGAAGACCCTTCCATTCAGTTGACCCAGCAGAGA CATTATCTAGCTATTATGTAAAAGAAAAGAAACTTCAACACAGTGTTAGTATAACCAACTATTT TTTGTGCTAGCCTATTACTGAAAGATGTTCTTGTAAAAGGATCACTACCATTTTTCCCAAATGT AGGTTGTTCTAGAGTGGTGCACAAAGATTAAGAAAGTAGGTTAAATGAACTTGTTCCCTCAATT ATATAGTAAGGTGGGAAGTGGGAGTGATGGTTCATTAACTTATGAGTCACGTTATTCAGCAAGG GCAACAAAGAAAGAGAACCTAAAAACGCCTACAAGTTTTTTATTGAATACGCAGGAGAGCTGCG TATTAATATATTAAAAAGAGTAAAGAAGGTCCAAAGAGGACCAGGAACCAAGTCCAAAGCGTAC AAGAACACTTCCATAGAAAACCAACTAGACCATTTTTTTCTCGAAAACGCAGGAGAACTGCGCC TCAATATACTAAGAAGAAGAAATAAATAAAGGTCAAAGAGACCACACGAGCCAAACCTACCCTA TGACAGTGAAAGGCTTTGGCGCCAGCTATAGCCCAAAGATTTATCCCCTCCCTAGCTGCCTGCT GAGCAACCGCAAGGTTGGGAGCAAAGCCCTCAAAGACACATCTATTTATATGCTTCCAGATGAT CCACGCACCCAGAATCACTAGGGACAAATTACTTGCATATAGAGAATAGTTAAGGCAAAATTGG CCTATGCCTGGATAATAGACCAAAGCATTAAGTCCATGACAACAATCTTGAATTAGCTCCACAA CTACAGACAGCAATGTTCCTAATGTCTTAAATCCAAGAATAATCATGAGCAAAATTAGAAGTGT ACCAATGTCCATTGAGATGCTGATTTCCTGAATCCTCATATTGGTTTAACCCATAGCAGTGACC ACTAACCAGGCAGCTTAAACAGGTTTCTAAAACTATGGCATAAACTGAAAACAAAGAAGCGCAC AGAAAACATAGGCTGAGAAATATTTAAAAACCTCTGTCTCCATGTTAGCTGTAAAGTTGTAATC AGAAACCTCAGAGAAATGGTGCAAAAGGAATGCCGAGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.100885913

Conservation Information
Conserved circRNAs	NA
PMCS	0.100885913

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							122869446-122867100(-)
122867155-122868450(-)
						
						Potential amino acid sequence
						
							METELDNVSAGSTEWKGLLKDYWERFSKYCADVSKLDGRKVERMLEEKFGPILFSDVYKDCRIC
PSCSEGTLRFKVSRYGEGYFVGCDRHPKCKYIARSLSQQEDETEPIEENAKSFEPRLLGVMPDS
DQKVSAFLLHHFSEVSDYNFTANMETELDNVSAGSTEWKGLLKDYWERFSKYCADVSKLDGRKV
ERMLEEKFGPILFSDVYKDCRICPSCSEGTLRFKVSRYGEGYFVGCDRHPKCKYIARSLSQQED
ETEPIEENAKSFEPRLLGVMPDSDQKVSAFLLHHFSEVSDYNFTANMETELDNVSAGSTEWKGL
LKDYWERFSKYCADVSKLDGRKVERMLEEKFGPILFSDVYKDCRICPSCSEGTLRFKVSRYGEG
YFVGCDRHPKCKYIARSLSQQEDETEPIEENAKSFEPRLLGVMPDSDQKVSAFLLHHFSEVSDY
NFTANMETELDNVSAGSTEWKGLLKDYWERFSKYCADVSKLDGRKVERMLEEKFGPILFSDVYK
DCRICPSCSEGTLRFKVSRYGEGYFVGCDRHPKCKYIARSLSQQEDETEPIEENAKSFEPRLLG
VMPDSDQK(-)
MQNLLNPGYLVSCLILIKRSRHSFCTISLRFLITTLQLTWRQS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	Y
Potential coding position	122869446-122867100(-) 122867155-122868450(-)
Potential amino acid sequence	METELDNVSAGSTEWKGLLKDYWERFSKYCADVSKLDGRKVERMLEEKFGPILFSDVYKDCRIC PSCSEGTLRFKVSRYGEGYFVGCDRHPKCKYIARSLSQQEDETEPIEENAKSFEPRLLGVMPDS DQKVSAFLLHHFSEVSDYNFTANMETELDNVSAGSTEWKGLLKDYWERFSKYCADVSKLDGRKV ERMLEEKFGPILFSDVYKDCRICPSCSEGTLRFKVSRYGEGYFVGCDRHPKCKYIARSLSQQED ETEPIEENAKSFEPRLLGVMPDSDQKVSAFLLHHFSEVSDYNFTANMETELDNVSAGSTEWKGL LKDYWERFSKYCADVSKLDGRKVERMLEEKFGPILFSDVYKDCRICPSCSEGTLRFKVSRYGEG YFVGCDRHPKCKYIARSLSQQEDETEPIEENAKSFEPRLLGVMPDSDQKVSAFLLHHFSEVSDY NFTANMETELDNVSAGSTEWKGLLKDYWERFSKYCADVSKLDGRKVERMLEEKFGPILFSDVYK DCRICPSCSEGTLRFKVSRYGEGYFVGCDRHPKCKYIARSLSQQEDETEPIEENAKSFEPRLLG VMPDSDQK(-) MQNLLNPGYLVSCLILIKRSRHSFCTISLRFLITTLQLTWRQS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Han et al., 2020;Zhang et al., 2019

circRNA

Detail information of Zm00001d037362_circ_g.1

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