Detail information of Os01g0739500_circ_g.1


General Information
CircRNA Name Os01g0739500_circ_g.1
ID in PlantcircBase osa_circ_003810
Alias Os_ciR2741
Organism Oryza sativa
Position chr1: 30885624-30886267  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os01g0739500
Parent gene annotation Conserved hypothetical protein. (Os01t0739500-01)
Parent gene strand -
Alternative splicing Os01g0739500_circ_igg.1 Os01g0739500_circ_g.2
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0739500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTCTTCTTCACGGTATACTGGAAGGACCGCAGCTCCACCGAATTTGCCCATGCTCGCAGTT
TTTCTGGCTTCTGGAACAAAGACACCGAAAGAACAGgaattgggggaggcctatagagcatgct
tttggtgttattcctggccatcagatttgcgcaagaacttccagacttcttggctattgatgtg
ctgtttgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 204
Transcript exons: 30885624-30885724,30886165-30886267
GAATTGGGGGAGGCCTATAGAGCATGCTTTTGGTGTTATTCCTGGCCATCAGATTTGCGCAAGA
ACTTCCAGACTTCTTGGCTATTGATGTGCTGTTTGCGTTCATCTTCTTCTTCACGGTATACTGG
AAGGACCGCAGCTCCACCGAATTTGCCCATGCTCGCAGTTTTTCTGGCTTCTGGAACAAAGACA
CCGAAAGAACAG

Transcript length: 211
Transcript exons: 30885624-30885682,30886116-30886267
GAATTGGGGGAGGCCTATAGAGCATGCTTTTGGTGTTATTCCTGGCCATCAGATTTGCGCCTCA
TCATCGGAGTCGCCTGAGATGGACGATGATGTCTCGAACAAGTCTTCATCTTCTTCTTCACGGT
ATACTGGAAGGACCGCAGCTCCACCGAATTTGCCCATGCTCGCAGTTTTTCTGGCTTCTGGAAC
AAAGACACCGAAAGAACAG

Genomic sequence GAATTGGGGGAGGCCTATAGAGCATGCTTTTGGTGTTATTCCTGGCCATCAGATTTGCGCAAGA
ACTTCCAGACTTCTTGGCTATTGATGTGCTGTTTGCGCCAGGTATATGACAAGCTTCCTGGTTC
CCATCCAGTGCTACATAGCTCTTGGATGATTTGATCTTCTTGTATGGATTCTCCTTCTTGCGTA
GATCCTCTAGGCATCTCACCTCAGACATACATGCAAAAGATTGAGACTTTCCGTCGTAGTATTT
GGATAATCCTTTCCTGCAAAGAACAACAAAGCACTTGCCCTGTGAGAAAATTTTCCTTTTGCTA
GTACATCTATTGATACTAATATGCAACTCTTCTTCCCCAGGAACTTACTTGACAGGGAGTTGTG
CCTTCATAGATGACAGATCGTAGAGGCTATCTGAATTCATCCTTCTCGCTGGCTGCTGCGCAAA
CTGGTCTTCTTGAGCTTCAGCTTCCTCGCTGTCTGAAAATTGAGCCTCATCATCGGAGTCGCCT
GAGATGGACGATGATGTCTCGAACAAGTCTTCATCTTCTTCTTCACGGTATACTGGAAGGACCG
CAGCTCCACCGAATTTGCCCATGCTCGCAGTTTTTCTGGCTTCTGGAACAAAGACACCGAAAGA
ACAG
Conservation Information
Conserved circRNAs osi_circ_002375* osi_circ_010701
PMCS 0.459804167
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015