Detail information of AT2G42880_circ_g.12


General Information
CircRNA Name AT2G42880_circ_g.12
ID in PlantcircBase ath_circ_018038
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17843564-17843923  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G42880
Parent gene annotation Mitogen-activated protein kinase 20
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACAAACAAGATTAACCGAAACACACACATAAATATCTCAGACAGAACAGATAGTATCGGAT
GGAATAATTGGAAAAAAGGAAGAGTTTTTGTTTCACagaaacattacaatagagataacactat
acaagaatcagatgcagaaggttctctactgatgctacaaaggacgcctaatgaaggatcaatg
caattgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAACATTACAATAGAGATAACACTATACAAGAATCAGATGCAGAAGGTTCTCTACTGATGCT
ACAAAGGACGCCTAATGAAGGATCAATGCAATTGAATGTCAATTTGCTGATGAAGAAATAAAAA
AAATGTCTCAACAACACATCATCTTGTCTTGAATGATGACAATTATGCGTTGTTTGTTTGATGA
CACTTGTAACGTTCATTGATCATAAACAGAGTTGTCCAAAACGGCAAAAAGATTAAAGACAGTA
ACAGGAAACAAACAAGATTAACCGAAACACACACATAAATATCTCAGACAGAACAGATAGTATC
GGATGGAATAATTGGAAAAAAGGAAGAGTTTTTGTTTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.140286875
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017