Plant Circular RNA Database

Detail information of Os10g0498200_circ_ag.1

			
						 General Information
					
						CircRNA Name
						Os10g0498200_circ_ag.1
					
						ID in PlantcircBase
						osa_circ_007326
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 18999055-19002382  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os10g0498200_circ_ag.2 Os10g0498200_circ_ag.3 Os10g0498200_circ_ag.4 Os10g0498200_circ_ag.5 Os10g0498200_circ_ag.6 Os10g0498300_circ_g.1 						
					
						Support reads
						3
					
						Tissues
						seed, pistil
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os10g0498200_circ_ag.1
ID in PlantcircBase	osa_circ_007326
Alias	NA
Organism	Oryza sativa
Position	chr10: 18999055-19002382 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os10g0498200_circ_ag.2 Os10g0498200_circ_ag.3 Os10g0498200_circ_ag.4 Os10g0498200_circ_ag.5 Os10g0498200_circ_ag.6 Os10g0498300_circ_g.1
Support reads	3
Tissues	seed, pistil
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCGCCCGGAAGCCATGGCCACGGCGGAGCAGCAGCAGCAGATCGAGCACGTCCACCTCCCCGTG
CGGGGCTCACCCTCCACGTCGCGCAAGCCGGCAAAGgggagctcgggacggtggtgttcctgca
cgggttcccggagatatggtactcgtggcgccaccagatgctcgccgtcgccgccgcagggtac
cgcgccgt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGGAGCTCGGGACGGTGGTGTTCCTGCACGGGTTCCCGGAGATATGGTACTCGTGGCGCCACCA
GATGCTCGCCGTCGCCGCCGCAGGGTACCGCGCCGTCGCGCCGGACTGGCGTGGGTACGGGCTC
TCCGACCAGCCGCCGGAGCCGGAGGCGGCGGTGTACGACGACCTCATCGAGGATCTCCTCGCCA
TCCTCGACGCCCTCGCCGTGCCCAAGGTGACGATGAAGTTTGATTTTTCACAGATTTTTATCCT
CTTTTCGTAGCTTCAGATTAAGAAAAAAAACTTCAGATTTTCAGTTTTGAGTGCGTGGCCTTTT
GCTATAGCTCGTAAAATGTAAGGTATAATTCATAATTGGTTGAACAAAGGTTCGAGATTTCGAT
TTTTTTTGTAGTTTTTTTTTAATCCTGGATAATTTGTAAGTAGAACGCATAAACTTTCAGTGTC
GTGATCCGTAAGGTAGAAATTTGGAGAGGATAATTTGTCTGCTATTATTTTCGTCAGTTGATAC
TACTATCAGTTCCACCGAATTGATTTGAAGCTGGTAAAAAACCCACGTTGGTAGCACCAACAAC
CAAGAGTGTATTGAAGGTCAGAAAATTCAGTGCAACATATTAAGGTGCCATTTTTCTATTCATT
CTAATATAATCGGCAATGCTTTTGCCGCCTACCTTTAAAGAAAGTGCCATTTTTCTGTCTAAAA
GATAAGGATATCAATTTCTCCCTAATAAAGAAATCAGCTCCTTATAAATTTGAAAATAAATAAT
GCCTATTTGGTTTCTTCTTGATAATTTATATGTTTCTTTGGGTTAGGCATTCCTTGTTGGAAAG
GATTTTGGGGCAATGCCAGCTTACGACTTTGCTCTCCGTCACCCAAACCGCACATGTGGTGTGA
TGTGTCTGGGCATCCCCTTAGGCACTGCTGGTTTGTCCTTTGACACATTGCCAGAAGGATTCTA
CATTTTACGTTGGGCGGTAACTCCGAAACTGTCATGATAATTTTTTTAGTGCACTATTTGCTTA
TAATGACCATGAAAAAGAAAAATATATCTTACAGCAACCAGGAAGAGCAGAAGCTGACTTTGGC
AAGTATGATGTAAAGAGAGTTGTGCGCACCATCTACATACTATTCTCTAGGAGCGAGATCCCCA
TAGCTAAGGAAAATCAAGAGATCATGGATCTTGCAGACTTATCGACACCCCTTCCCGAGTGGTT
TAGTGAGGAGGATCTTGATGTCTACTCATCCCTCTATGAGAATTCTGGTTTTAGATATCCGCTA
CAGATGCCATATAGGTAAAAATATTTTCTTCGGATATTTGTACTCGATGGTACTAAGTTCACCA
ATATTTGATAGTTCGAGATTTGTGCCATGCTTGTTAGGTCTCTGCACCAGAGAAAACCAATTGG
AGATGCAAAATTCCAAGTCCCAGTGTTTATTGTCATGGGAGAAAAAGATTATGTCTTTAAGTTC
CCTGGTATCGAGTCTGCTATGAAAGACGGAACTATGGAGAAGCATGCACCAAACATAAAGATCA
CCTACATCCCTGAAGGAGGGCATTTTGTGCAGGAGCAGTTCCGTGACTATGTGAATGAGCTCCT
TCTTGGCTTCTTGAAAGATCATCCTGTGGTTATATAAATGCTATTGTAGCCTCAGTTGTGCTTC
ACCCGTAGTTCAAGTTGGCTTAGAAAACGTTGTGCTATATCATGGTATGAATTTGTCAACAAAC
TAAGGATCAGCTATGGCTAGTTTGTTACTTTCAGTAATGCCTATTTGAGCTTGTTGTATCTAGG
TTGTCCTGCTGGTGTTACTAGCAATGTAAAGACTAAACCCATTGCTATACTTCTACCATGACTT
TTGCAAGCCAATGATGTGAACTTATACCATGATTTTAGAAAGTCTTACTGTAAAAGACGGAGTA
CGTAGTTACTATGTATACGGATGATTAATCATAATTATATAAAAAATTAAAAAATTAACAATCA
CTGTAATAAGTACTTATCTTTTATGATTGATTTAGTTTTAGAGAAATGTTTGTAGATCACCTAT
CTCATATTAGAGAAATTTTGACCTAATCCTCTTATATTAGAGAAATATTATTCCGGTGGCCGTG
CTTCCTCCCTTCCTCATCCTTGTACCAAACACAATAACTCAAACTGTCATCCCTCTTTCAGCCT
CATCAACCCAATAAATAAATAAATATAGACTTAAGTCTACTTTAACCCAAAAATTTTGTGTGTG
CGCGTGCTTGTGCGTGTGCGGGGGAGTGGTGGTGGGGGTTGGGGGCCGTGGTTGAATCTTTTTT
TAAATACTAAAATGAGTACTCATATTCGTTTTCTTTTTTTCTGTTAAATACTAAAATGAGTACG
AATAGCTCGAATACAAAAATAATCATGGATTATCTCGAATCCAGATAAGGGCAAAATATAATTA
GACACAAAAAGAACAAATAATTAAAAAAATCATATTGTTTTGGTGTAAACATATAAAGGCAATT
CTGAAATGTCATCTACTCCCTCTGTTTCAGGTTATAAGACGTTTTGACATTTGGTCAAACTCAA
ACTGTTTCAAGTTTAACTAAGTTTATAGATAAATATAGTGATATTTATAATACTAAATTAGTTT
CATCAAATCAATAATTGAATATATTTTCATAATAAATTTGTCTTGAGTTGAAAATGTTACTACT
TTTTCCTATAAACTTAATCAAACTTAAAATAGTTTGACTTTGACTAAAGTAAAAAATATCTTAT
AACCTAAAACGGAAGGAGTAGATAACTAAGAGTGCCAGGTAGAAGGAAAACCTTCTCTACCTGG
CGTCCACTAGTTCGATATGTAGCAGTACAAAAACGTACTCTCTCCAGACTGATAATACTTGTTG
TTTTAGATAAGGGTGAGGTCAAACTTTAGAATAGTTGATTAGAATTATTTTTAAAGTATTTGTT
TTTCAAATATCACTATAGATTAATAAAATCATATATTTGTTAACATTTATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATAAT
AAAAAATAATGGTCAAAGTTGTTTTTTTAGACCGTATCCTTATCCAAAACGACAATTATTATCA
ACCCGTAGAGATGACGCATCCCCACCTCACACTCGCACTGTCACGACGTCGCCTCTGCAATCTG
AACTTCTGCGGCGAGGAGGGAGCTCGAGCCGCCCGGAAGCCATGGCCACGGCGGAGCAGCAGCA
GCAGATCGAGCACGTCCACCTCCCCGTGCGGGGCTCACCCTCCACGTCGCGCAAGCCGGCAAAG
						
					

			
		

Sequences
Splice junction sequence	CCGCCCGGAAGCCATGGCCACGGCGGAGCAGCAGCAGCAGATCGAGCACGTCCACCTCCCCGTG CGGGGCTCACCCTCCACGTCGCGCAAGCCGGCAAAGgggagctcgggacggtggtgttcctgca cgggttcccggagatatggtactcgtggcgccaccagatgctcgccgtcgccgccgcagggtac cgcgccgt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGGAGCTCGGGACGGTGGTGTTCCTGCACGGGTTCCCGGAGATATGGTACTCGTGGCGCCACCA GATGCTCGCCGTCGCCGCCGCAGGGTACCGCGCCGTCGCGCCGGACTGGCGTGGGTACGGGCTC TCCGACCAGCCGCCGGAGCCGGAGGCGGCGGTGTACGACGACCTCATCGAGGATCTCCTCGCCA TCCTCGACGCCCTCGCCGTGCCCAAGGTGACGATGAAGTTTGATTTTTCACAGATTTTTATCCT CTTTTCGTAGCTTCAGATTAAGAAAAAAAACTTCAGATTTTCAGTTTTGAGTGCGTGGCCTTTT GCTATAGCTCGTAAAATGTAAGGTATAATTCATAATTGGTTGAACAAAGGTTCGAGATTTCGAT TTTTTTTGTAGTTTTTTTTTAATCCTGGATAATTTGTAAGTAGAACGCATAAACTTTCAGTGTC GTGATCCGTAAGGTAGAAATTTGGAGAGGATAATTTGTCTGCTATTATTTTCGTCAGTTGATAC TACTATCAGTTCCACCGAATTGATTTGAAGCTGGTAAAAAACCCACGTTGGTAGCACCAACAAC CAAGAGTGTATTGAAGGTCAGAAAATTCAGTGCAACATATTAAGGTGCCATTTTTCTATTCATT CTAATATAATCGGCAATGCTTTTGCCGCCTACCTTTAAAGAAAGTGCCATTTTTCTGTCTAAAA GATAAGGATATCAATTTCTCCCTAATAAAGAAATCAGCTCCTTATAAATTTGAAAATAAATAAT GCCTATTTGGTTTCTTCTTGATAATTTATATGTTTCTTTGGGTTAGGCATTCCTTGTTGGAAAG GATTTTGGGGCAATGCCAGCTTACGACTTTGCTCTCCGTCACCCAAACCGCACATGTGGTGTGA TGTGTCTGGGCATCCCCTTAGGCACTGCTGGTTTGTCCTTTGACACATTGCCAGAAGGATTCTA CATTTTACGTTGGGCGGTAACTCCGAAACTGTCATGATAATTTTTTTAGTGCACTATTTGCTTA TAATGACCATGAAAAAGAAAAATATATCTTACAGCAACCAGGAAGAGCAGAAGCTGACTTTGGC AAGTATGATGTAAAGAGAGTTGTGCGCACCATCTACATACTATTCTCTAGGAGCGAGATCCCCA TAGCTAAGGAAAATCAAGAGATCATGGATCTTGCAGACTTATCGACACCCCTTCCCGAGTGGTT TAGTGAGGAGGATCTTGATGTCTACTCATCCCTCTATGAGAATTCTGGTTTTAGATATCCGCTA CAGATGCCATATAGGTAAAAATATTTTCTTCGGATATTTGTACTCGATGGTACTAAGTTCACCA ATATTTGATAGTTCGAGATTTGTGCCATGCTTGTTAGGTCTCTGCACCAGAGAAAACCAATTGG AGATGCAAAATTCCAAGTCCCAGTGTTTATTGTCATGGGAGAAAAAGATTATGTCTTTAAGTTC CCTGGTATCGAGTCTGCTATGAAAGACGGAACTATGGAGAAGCATGCACCAAACATAAAGATCA CCTACATCCCTGAAGGAGGGCATTTTGTGCAGGAGCAGTTCCGTGACTATGTGAATGAGCTCCT TCTTGGCTTCTTGAAAGATCATCCTGTGGTTATATAAATGCTATTGTAGCCTCAGTTGTGCTTC ACCCGTAGTTCAAGTTGGCTTAGAAAACGTTGTGCTATATCATGGTATGAATTTGTCAACAAAC TAAGGATCAGCTATGGCTAGTTTGTTACTTTCAGTAATGCCTATTTGAGCTTGTTGTATCTAGG TTGTCCTGCTGGTGTTACTAGCAATGTAAAGACTAAACCCATTGCTATACTTCTACCATGACTT TTGCAAGCCAATGATGTGAACTTATACCATGATTTTAGAAAGTCTTACTGTAAAAGACGGAGTA CGTAGTTACTATGTATACGGATGATTAATCATAATTATATAAAAAATTAAAAAATTAACAATCA CTGTAATAAGTACTTATCTTTTATGATTGATTTAGTTTTAGAGAAATGTTTGTAGATCACCTAT CTCATATTAGAGAAATTTTGACCTAATCCTCTTATATTAGAGAAATATTATTCCGGTGGCCGTG CTTCCTCCCTTCCTCATCCTTGTACCAAACACAATAACTCAAACTGTCATCCCTCTTTCAGCCT CATCAACCCAATAAATAAATAAATATAGACTTAAGTCTACTTTAACCCAAAAATTTTGTGTGTG CGCGTGCTTGTGCGTGTGCGGGGGAGTGGTGGTGGGGGTTGGGGGCCGTGGTTGAATCTTTTTT TAAATACTAAAATGAGTACTCATATTCGTTTTCTTTTTTTCTGTTAAATACTAAAATGAGTACG AATAGCTCGAATACAAAAATAATCATGGATTATCTCGAATCCAGATAAGGGCAAAATATAATTA GACACAAAAAGAACAAATAATTAAAAAAATCATATTGTTTTGGTGTAAACATATAAAGGCAATT CTGAAATGTCATCTACTCCCTCTGTTTCAGGTTATAAGACGTTTTGACATTTGGTCAAACTCAA ACTGTTTCAAGTTTAACTAAGTTTATAGATAAATATAGTGATATTTATAATACTAAATTAGTTT CATCAAATCAATAATTGAATATATTTTCATAATAAATTTGTCTTGAGTTGAAAATGTTACTACT TTTTCCTATAAACTTAATCAAACTTAAAATAGTTTGACTTTGACTAAAGTAAAAAATATCTTAT AACCTAAAACGGAAGGAGTAGATAACTAAGAGTGCCAGGTAGAAGGAAAACCTTCTCTACCTGG CGTCCACTAGTTCGATATGTAGCAGTACAAAAACGTACTCTCTCCAGACTGATAATACTTGTTG TTTTAGATAAGGGTGAGGTCAAACTTTAGAATAGTTGATTAGAATTATTTTTAAAGTATTTGTT TTTCAAATATCACTATAGATTAATAAAATCATATATTTGTTAACATTTATATATATATATATAT ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATAAT AAAAAATAATGGTCAAAGTTGTTTTTTTAGACCGTATCCTTATCCAAAACGACAATTATTATCA ACCCGTAGAGATGACGCATCCCCACCTCACACTCGCACTGTCACGACGTCGCCTCTGCAATCTG AACTTCTGCGGCGAGGAGGGAGCTCGAGCCGCCCGGAAGCCATGGCCACGGCGGAGCAGCAGCA GCAGATCGAGCACGTCCACCTCCCCGTGCGGGGCTCACCCTCCACGTCGCGCAAGCCGGCAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_002879* 						
					
						PMCS
						0.40609216

Conservation Information
Conserved circRNAs	osi_circ_002879*
PMCS	0.40609216

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0498200_circ_ag.1

Address

Any questions?

Supported by