Detail information of Os03g0250200_circ_g.1


General Information
CircRNA Name Os03g0250200_circ_g.1
ID in PlantcircBase osa_circ_018874
Alias NA
Organism Oryza sativa
Position chr3: 7932012-7932701  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0250200
Parent gene annotation TB2/DP1 and HVA22 related protein family protein. (Os03t0250200-
01);Similar to TB2/DP1, HVA22 family protein, expressed. (Os03t0
250200-02)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0250200-02:4
Os03t0250200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAATACTGACACCAAAATATGAGCTGCTCAATCTCTGGTTTATTCAGTTCGACAGTCTTGTAG
CACTCATATGCTGGATAGGCGTAGCCAAAGGCCAACctgagaaggttgttgacttgacctctga
gatggtgattgcgaagcaacatacttcaaaacgtcaaagaatgtattctgtcctacagtagcag
ccttttga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 439
Transcript exons: 7932012-7932230,7932309-7932372,7932456-7932512,7932603-
7932701
CTGAGAAGGTTGTTGACTTGACCTCTGAGATGGTGATTGCGAAGCAACATACTTCAAAACGTCA
AAGAATGTATTCTGTCCTACAGTAGCAGCCTTTTGAAAATAAAGGACAACTACATCGGTGGCTC
GAGCTCTCAACTCAAGCAAATTACGGTCAATTTCATTCTCATGCTGTGAAATATATGGCCTAAA
GAAAGTCCCATAAATGTAGGTAGTTCCCTTTGTCTTAGGGTACCACAAGTATATAAAGAACATC
AGCTTTGCTTCCGAGTAAAATGGTAGCCATGATATTGTAAAATCTCCAAATCTCTCCATAACCG
TCATCAGAGCTACTAGAATCCAATACTGACACCAAAATATGAGCTGCTCAATCTCTGGTTTATT
CAGTTCGACAGTCTTGTAGCACTCATATGCTGGATAGGCGTAGCCAAAGGCCAAC

Genomic sequence CTGAGAAGGTTGTTGACTTGACCTCTGAGATGGTGATTGCGAAGCAACATACTTCAAAACGTCA
AAGAATGTATTCTGTCCTACAGTAGCAGCCTTTTGAAAATAAAGGACAACTACATCGGTGGCTC
GAGCTCTCAACTCAAGCAAATTACGGTCAATTTCATTCTCATGCTGTGAAATATATGGCCTAAA
GAAAGTCCCATAAATGTAGGTAGTTCCCTACAATGAAGGCAAATGTCAATCCAATGTACAGAAA
AAACATCTAAAAATAGAAGCTATAGGTGACAAATCGAGTACCTTTGTCTTAGGGTACCACAAGT
ATATAAAGAACATCAGCTTTGCTTCCGAGTAAAATGGTAGCCTTCAACACGATCATATGCATGG
TGCAACTAATGTTAGAGACTGTTAAAAAGAGATGAAAAATGCAAACGTTGGCAGTCTTACCATG
ATATTGTAAAATCTCCAAATCTCTCCATAACCGTCATCAGAGCTACTAGAATCCTAGACACAGG
CACAGCAAATAAAAGCTAAATGTCTCGCAAATACTAATGAAGGATAATGTCATGATCAAAGATG
AAAGAATCATCTTACCAATACTGACACCAAAATATGAGCTGCTCAATCTCTGGTTTATTCAGTT
CGACAGTCTTGTAGCACTCATATGCTGGATAGGCGTAGCCAAAGGCCAAC
Conservation Information
Conserved circRNAs osi_circ_014133
PMCS 0.34992378
Functional Information
Coding potential Y
Potential coding position 7932498-7932671(-)
7932063-7932671(-)
Potential amino acid sequence MTVMERFGDFTISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELR
ARATDVVVLYFQKAATVGQNTFFDVLKYVASQSPSQRSSQQPSQVGLWLRLSSI*(-)
MLLRNHHLRGQVNNLLRLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGD
FTISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVVVL
YFQKAATVGQNTFFDVLKYVASQSPSQRSSQQPSQVGLWLRLSSI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017