Plant Circular RNA Database

Detail information of Os01g0357150_circ_ag.1

			
						 General Information
					
						CircRNA Name
						Os01g0357150_circ_ag.1
					
						ID in PlantcircBase
						osa_circ_001697
					
						Alias
						Os_ciR18
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 14451681-14462776  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os01g0357100_circ_g.1 Os01g0357100_circ_g.2 Os01g0357100_circ_g.3 						
					
						Support reads
						5474/10
					
						Tissues
						root/shoot
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os01g0357150_circ_ag.1
ID in PlantcircBase	osa_circ_001697
Alias	Os_ciR18
Organism	Oryza sativa
Position	chr1: 14451681-14462776 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os01g0357100_circ_g.1 Os01g0357100_circ_g.2 Os01g0357100_circ_g.3
Support reads	5474/10
Tissues	root/shoot
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCA
AGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGTatgggcggttcatgatgcggctgaagct
gccaaacggtgtgacgacgagcgagcagacgaggtacctggcgagcgtgatcgaggcgtacggc
aaggaggg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 267
Transcript exons: 14451681-14451834,14462664-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGG
CCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCG
CAAGCATCAGT
Transcript length: 274
Transcript exons: 14451681-14451867,14462690-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCAGGAG
ATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCC
ACCCCCGCAAGCATCAGT
Transcript length: 287
Transcript exons: 14451681-14451854,14462664-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGCAAGGAGCTCGCCAAGAT
GCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGG
CTCGGCCTCTTCCACCCCCGCAAGCATCAGT
Transcript length: 298
Transcript exons: 14451681-14451866,14462665-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGAAGGAG
CTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGC
GGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT
Transcript length: 303
Transcript exons: 14451681-14451870,14462664-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCA
AGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGA
CGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT
Transcript length: 307
Transcript exons: 14451681-14451874,14462664-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG
GCCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACA
TCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT
Transcript length: 315
Transcript exons: 14451681-14451882,14462664-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG
GCCTCACCAGCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAA
GGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT
Transcript length: 326
Transcript exons: 14451681-14451894,14462665-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG
GCCTCACCAGCCTCCAGAGCGGAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGAC
AAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGC
ATCAGT
Transcript length: 327
Transcript exons: 14451681-14451894,14462664-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG
GCCTCACCAGCCTCCAGAGCGGCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGA
CAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAG
CATCAGT
Transcript length: 343
Transcript exons: 14451681-14451911,14462665-14462776
ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA
CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC
TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG
GCCTCACCAGCCTCCAGAGCGGCATGGACAACGTCCGCAAAGGAGCTCGCCAAGATGCCCATGG
AGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCT
CTTCCACCCCCGCAAGCATCAGT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	AAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCA AGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGTatgggcggttcatgatgcggctgaagct gccaaacggtgtgacgacgagcgagcagacgaggtacctggcgagcgtgatcgaggcgtacggc aaggaggg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 267 Transcript exons: 14451681-14451834,14462664-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGG CCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCG CAAGCATCAGT Transcript length: 274 Transcript exons: 14451681-14451867,14462690-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCAGGAG ATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCC ACCCCCGCAAGCATCAGT Transcript length: 287 Transcript exons: 14451681-14451854,14462664-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGCAAGGAGCTCGCCAAGAT GCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGG CTCGGCCTCTTCCACCCCCGCAAGCATCAGT Transcript length: 298 Transcript exons: 14451681-14451866,14462665-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGAAGGAG CTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGC GGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT Transcript length: 303 Transcript exons: 14451681-14451870,14462664-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCA AGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGA CGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT Transcript length: 307 Transcript exons: 14451681-14451874,14462664-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG GCCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACA TCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT Transcript length: 315 Transcript exons: 14451681-14451882,14462664-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG GCCTCACCAGCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAA GGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGCATCAGT Transcript length: 326 Transcript exons: 14451681-14451894,14462665-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG GCCTCACCAGCCTCCAGAGCGGAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGAC AAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAGC ATCAGT Transcript length: 327 Transcript exons: 14451681-14451894,14462664-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG GCCTCACCAGCCTCCAGAGCGGCAAGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGA CAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCTCTTCCACCCCCGCAAG CATCAGT Transcript length: 343 Transcript exons: 14451681-14451911,14462665-14462776 ATGGGCGGTTCATGATGCGGCTGAAGCTGCCAAACGGTGTGACGACGAGCGAGCAGACGAGGTA CCTGGCGAGCGTGATCGAGGCGTACGGCAAGGAGGGCTGCGCCGACGTGACAACCCGCCAGAAC TGGCAGATCCGCGGCGTCACGCTCCCCGACGTGCCGGCCATCCTCGACGGGCTCAACGCCGTCG GCCTCACCAGCCTCCAGAGCGGCATGGACAACGTCCGCAAAGGAGCTCGCCAAGATGCCCATGG AGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGGCTCGGCCT CTTCCACCCCCGCAAGCATCAGT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.718952623

Conservation Information
Conserved circRNAs	NA
PMCS	0.718952623

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR394 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR394
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os01g0357150_circ_ag.1

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