Plant Circular RNA Database

Detail information of AT5G45472_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G45472_circ_g.1
					
						ID in PlantcircBase
						ath_circ_042548
					
						Alias
						5:18423804-18426001
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 18423804-18426001  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G45472						
					
						Parent gene annotation
						
							Potential natural antisense gene, locus overlaps with AT5G45470
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G45472_circ_g.2 AT5G45470_circ_g.1 AT5G45472_circ_g.2 						
					
						Support reads
						1/1/1
					
						Tissues
						seedling;leaf;flower
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G45472.3:3
AT5G45472.2:2
AT5G45472.1:3
AT5G45472.4:4

General Information
CircRNA Name	AT5G45472_circ_g.1
ID in PlantcircBase	ath_circ_042548
Alias	5:18423804-18426001
Organism	Arabidpsis thaliana
Position	chr5: 18423804-18426001 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G45472
Parent gene annotation	Potential natural antisense gene, locus overlaps with AT5G45470
Parent gene strand	+
Alternative splicing	AT5G45472_circ_g.2 AT5G45470_circ_g.1 AT5G45472_circ_g.2
Support reads	1/1/1
Tissues	seedling;leaf;flower
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G45472.3:3 AT5G45472.2:2 AT5G45472.1:3 AT5G45472.4:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAAATCGAGATTCTTGGTTGCATCACTTCTGAGATTCTGAAGTTTTTCTCTGGTCGGATGATGT
TCACTATTGCTGCTTCATAATGGTGGATTCAAAGAGccacaagggtaccagaagcaaagacccg
tgagacagttccaataccggtatgaagaatcgcgatcttggtgaatagagcatcatagagaaag
ccgagctc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCACAAGGGTACCAGAAGCAAAGACCCGTGAGACAGTTCCAATACCGGTATGAAGAATCGCGAT
CTTGGTGAATAGAGCATCATAGAGAAAGCCGAGCTCAATCTCAATGATCCTCAAAGCTTCCTCT
GGATCATTTAAATTCTCAAAGATCTCTAGGCTCTCGTCACGCTCCCTGAAGCTGAAGATAAGGT
TGACTACAAGGCCCTTGAATGTGTTGAAGAATTTGTAAGCATACTGAACAATCTCAAGATCGGT
CAAATCTTTTTTTCTTTTCTTCGAAGCTAATGCTGGATGCTCTAACTTCTTAGGCCTATTTTCT
TTGTCAGGCTCATCAATCAGAACGATCTTGGTGGGAAGTCTTGCCTCTTTCTTGGCCTTGTACT
CCTCCATGAGCTTGGCGTAGTTTGGTCCTGGATCTGGTGCTTGAATCATAGAGTCCCTAAACTT
GTCCAAACTTGCACTATACAGAGCCGTTGTCCTCTCCAGATACTTTATAGTCCCAGAAACAAAC
ACTAAGACTATAACCACCCAAAGGCTATTGGGCAGAGACATGACAACCACATAGACACCAGCAA
TTGCCTGAAAGACAAGCCCAAAGACATGTCGTAGCCAGAGAGCGTTATCTTCAAGCGCGAAAGC
TGTGATAGTGTCTGGTCCACCAAGATGCAAGAGCAAGAATGGTGCCCATAAAGCCATTACCTTT
TTGTCCTGTGGAGGGTCATCAGGTTTGAGATCTTTACCTTGATTCTTGGAGATAAGACCAACAG
CGAAATTAGCAGACCAATCTGCTAAGAGATAAGAGGACCAAACAAGCACGATCAAGAGCCTTCT
TGGTGTACGTTTCCTTAGAGGAGAGAAGCAAATGAGAATGGCTTGAAGGGTAAGACTTAGAATG
ACTGCTCCTCTTATGTTCCACCTATCCCAAACATCTTTGATATGTTTTGGTATCACTTCCACCA
TTTTTGCTCTCTCTCAGAGGAAAAAAGATAGATCTTTTTCCTTCTCTCTTTCTCTCTCTTGGAT
TTACTTGAGAAATTTGAGTTTCTTTCTTTTTTTTTCTCTCTCTCTCTCTTCTGGTTATTGAGAT
GTTTTTTTTTCCTCAGATTTACTTGAAAAGTTTGGGGTTTGTGGAATGTTTTTGGGACGCCATT
GATGTTGTTCTTTTTCTTTTCTTTTCTTTTTTTACCAGAAGCTCTCACTGGAGCGAGAAGAAAG
ACGACTCTGCAACTCAGGTATAATTTTTTATTTTTTGCAAAATAATAGTTTTTGTATTTTGCAT
TTTCGTCAATTATTATTATTCTTGCAATTTGTTTATTAAAAATTTACTGCTGGTATGGACACCA
TAAAAATATTCTTTTATTTCTTTTGTTTTAGTCAATCAATGAGTCATTTTCGACCTAGCTTTTT
CTTTTTCTTTTTTTTTGACGTGAAGAGACGACTTAGCTATTGGTCTTTTTTCTATTCATATTTG
ATAGTAATAAATATATGTATGTTGAATAATAGTTAGTAGTATTAAAGTTCAAGTGTCATTAGTT
GAGCTCGCGTCGTTTTAGTAAATATAAAATGATCCACTAAACTCAGATTTGAATGGTTAGACTA
TTATGTTTGGGATGGTTATATAATAATATTATTAAGTATAACTGTATAACCATAGTTATAACTT
ATATTATTTTAAAGACTGTCCCGGGTTAGTCTTTTTCTGAAGTTAGTCATTCATTATTTAGTGA
CTATTGAGGCATTGACCTAAAGAAATAATGAAGATTCAAAAATACTTCTATAGCTGGCAGAATT
TACTTCTTTATACCTCTATATGTATATATACTTGTCTACTAAATAAATAATTTGAACTTGAGGT
TCATTTAATGAATATCTGTAAATAAAATTGAGTTTTGAAATATTATCTCTTCAACCAATAACTT
GAATTAGGTCCAACTAATAATTTTGTTACATGAAGAGTTCACATCTCAGTAATTATTAGTCTAA
AATTGGAGTTATTTTATTTTAAACATACTTAAGAATTATTTACTGTATTTACTTTTTTGTACAG
ATGGAAAAAGTTTTTACCGTTGCCAACAATTTTATTTCAGAGTTCAGGACTAAATCGAGATTCT
TGGTTGCATCACTTCTGAGATTCTGAAGTTTTTCTCTGGTCGGATGATGTTCACTATTGCTGCT
TCATAATGGTGGATTCAAAGAG
						
					

			
		

Sequences
Splice junction sequence	TAAATCGAGATTCTTGGTTGCATCACTTCTGAGATTCTGAAGTTTTTCTCTGGTCGGATGATGT TCACTATTGCTGCTTCATAATGGTGGATTCAAAGAGccacaagggtaccagaagcaaagacccg tgagacagttccaataccggtatgaagaatcgcgatcttggtgaatagagcatcatagagaaag ccgagctc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCACAAGGGTACCAGAAGCAAAGACCCGTGAGACAGTTCCAATACCGGTATGAAGAATCGCGAT CTTGGTGAATAGAGCATCATAGAGAAAGCCGAGCTCAATCTCAATGATCCTCAAAGCTTCCTCT GGATCATTTAAATTCTCAAAGATCTCTAGGCTCTCGTCACGCTCCCTGAAGCTGAAGATAAGGT TGACTACAAGGCCCTTGAATGTGTTGAAGAATTTGTAAGCATACTGAACAATCTCAAGATCGGT CAAATCTTTTTTTCTTTTCTTCGAAGCTAATGCTGGATGCTCTAACTTCTTAGGCCTATTTTCT TTGTCAGGCTCATCAATCAGAACGATCTTGGTGGGAAGTCTTGCCTCTTTCTTGGCCTTGTACT CCTCCATGAGCTTGGCGTAGTTTGGTCCTGGATCTGGTGCTTGAATCATAGAGTCCCTAAACTT GTCCAAACTTGCACTATACAGAGCCGTTGTCCTCTCCAGATACTTTATAGTCCCAGAAACAAAC ACTAAGACTATAACCACCCAAAGGCTATTGGGCAGAGACATGACAACCACATAGACACCAGCAA TTGCCTGAAAGACAAGCCCAAAGACATGTCGTAGCCAGAGAGCGTTATCTTCAAGCGCGAAAGC TGTGATAGTGTCTGGTCCACCAAGATGCAAGAGCAAGAATGGTGCCCATAAAGCCATTACCTTT TTGTCCTGTGGAGGGTCATCAGGTTTGAGATCTTTACCTTGATTCTTGGAGATAAGACCAACAG CGAAATTAGCAGACCAATCTGCTAAGAGATAAGAGGACCAAACAAGCACGATCAAGAGCCTTCT TGGTGTACGTTTCCTTAGAGGAGAGAAGCAAATGAGAATGGCTTGAAGGGTAAGACTTAGAATG ACTGCTCCTCTTATGTTCCACCTATCCCAAACATCTTTGATATGTTTTGGTATCACTTCCACCA TTTTTGCTCTCTCTCAGAGGAAAAAAGATAGATCTTTTTCCTTCTCTCTTTCTCTCTCTTGGAT TTACTTGAGAAATTTGAGTTTCTTTCTTTTTTTTTCTCTCTCTCTCTCTTCTGGTTATTGAGAT GTTTTTTTTTCCTCAGATTTACTTGAAAAGTTTGGGGTTTGTGGAATGTTTTTGGGACGCCATT GATGTTGTTCTTTTTCTTTTCTTTTCTTTTTTTACCAGAAGCTCTCACTGGAGCGAGAAGAAAG ACGACTCTGCAACTCAGGTATAATTTTTTATTTTTTGCAAAATAATAGTTTTTGTATTTTGCAT TTTCGTCAATTATTATTATTCTTGCAATTTGTTTATTAAAAATTTACTGCTGGTATGGACACCA TAAAAATATTCTTTTATTTCTTTTGTTTTAGTCAATCAATGAGTCATTTTCGACCTAGCTTTTT CTTTTTCTTTTTTTTTGACGTGAAGAGACGACTTAGCTATTGGTCTTTTTTCTATTCATATTTG ATAGTAATAAATATATGTATGTTGAATAATAGTTAGTAGTATTAAAGTTCAAGTGTCATTAGTT GAGCTCGCGTCGTTTTAGTAAATATAAAATGATCCACTAAACTCAGATTTGAATGGTTAGACTA TTATGTTTGGGATGGTTATATAATAATATTATTAAGTATAACTGTATAACCATAGTTATAACTT ATATTATTTTAAAGACTGTCCCGGGTTAGTCTTTTTCTGAAGTTAGTCATTCATTATTTAGTGA CTATTGAGGCATTGACCTAAAGAAATAATGAAGATTCAAAAATACTTCTATAGCTGGCAGAATT TACTTCTTTATACCTCTATATGTATATATACTTGTCTACTAAATAAATAATTTGAACTTGAGGT TCATTTAATGAATATCTGTAAATAAAATTGAGTTTTGAAATATTATCTCTTCAACCAATAACTT GAATTAGGTCCAACTAATAATTTTGTTACATGAAGAGTTCACATCTCAGTAATTATTAGTCTAA AATTGGAGTTATTTTATTTTAAACATACTTAAGAATTATTTACTGTATTTACTTTTTTGTACAG ATGGAAAAAGTTTTTACCGTTGCCAACAATTTTATTTCAGAGTTCAGGACTAAATCGAGATTCT TGGTTGCATCACTTCTGAGATTCTGAAGTTTTTCTCTGGTCGGATGATGTTCACTATTGCTGCT TCATAATGGTGGATTCAAAGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.249416449

Conservation Information
Conserved circRNAs	NA
PMCS	0.249416449

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G45472_circ_g.1

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