Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d041445_circ_g.4 |
ID in PlantcircBase | zma_circ_007629 |
Alias | zma_circ_0001144, GRMZM2G701689_C2 |
Organism | Zea mays |
Position | chr3: 120200561-120202784 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d041445 |
Parent gene annotation |
Protein tesmin/TSO1-like CXC 2 |
Parent gene strand | - |
Alternative splicing | Zm00001d041445_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d041445_T010:4 Zm00001d041445_T015:4 Zm00001d041445_T014:4 Zm00001d041445_T007:4 Zm00001d041445_T020:5 Zm00001d041445_T019:3 Zm00001d041445_T002:4 Zm00001d041445_T012:5 Zm00001d041445_T022:4 Zm00001d041445_T016:4 Zm00001d041445_T013:4 Zm00001d041445_T004:4 Zm00001d041445_T006:4 Zm00001d041445_T008:3 Zm00001d041445_T005:3 Zm00001d041445_T018:4 Zm00001d041445_T017:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.092607997 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
120202763-120200744(+) 120202439-120202726(-) 120200574-120202726(-) |
Potential amino acid sequence |
MKLNTGESVSGIWTSYNYNACMKCHHHYQTYAFSSWDYPD*(+) MIRCKDIVPENCNITCQLNEASIDSSDHTSSSTGQLTQSIKDAAGSMESDKDQCAGGKIDLTMS QECTGLEGMNLDESSPDRMDSSHSGIVVHENQLSEQNNDEPAAYNGVYMITHQSSSDMLTLAVP SGTEAQPMNDTQKADNPYPCESLLDVQSSGNCTQNSVHEPHLYWNGAVEGAAVAYTPQALPGAL QSQLMPCNKLNEPKDYMPTEQNALSQHLRGMRRRSLFNEKAGLSNKGVDKASDHHPVNSTTPKC KTISGDNSKTLRTPPCALPGIGLHLNALAATATPKEKIVPQDIQSTINESSNLIGPAGSSPAPS EQNIINDDFTQTTDVATAEASSQGSPKKKRHKFDSGDGTSCKRCSCKKSKCLKLILLCSISSTI SRLYHHLNL*(-) MPETDSPVFNFINNLSPIPPPKPLDSAHNVQLFKSSDLAPVSSIFASPHVNPTKGTKVLIRDES VQLPHELHSPSSVRTRIGTSGSFRMIRCKDIVPENCNITCQLNEASIDSSDHTSSSTGQLTQSI KDAAGSMESDKDQCAGGKIDLTMSQECTGLEGMNLDESSPDRMDSSHSGIVVHENQLSEQNNDE PAAYNGVYMITHQSSSDMLTLAVPSGTEAQPMNDTQKADNPYPCESLLDVQSSGNCTQNSVHEP HLYWNGAVEGAAVAYTPQALPGALQSQLMPCNKLNEPKDYMPTEQNALSQHLRGMRRRSLFNEK AGLSNKGVDKASDHHPVNSTTPKCKTISGDNSKTLRTPPCALPGIGLHLNALAATATPKEKIVP QDIQSTINESSNLIGPAGSSPAPSEQNIINDDFTQTTDVATAEASSQGSPKKKRHKFDSGDGTS CKRCSCKKSKCLKLILLCSISSTISRLYHHLNL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |