Detail information of Zm00001d041445_circ_g.4


General Information
CircRNA Name Zm00001d041445_circ_g.4
ID in PlantcircBase zma_circ_007629
Alias zma_circ_0001144, GRMZM2G701689_C2
Organism Zea mays
Position chr3: 120200561-120202784  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d041445
Parent gene annotation Protein tesmin/TSO1-like CXC 2
Parent gene strand -
Alternative splicing Zm00001d041445_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d041445_T010:4
Zm00001d041445_T015:4
Zm00001d041445_T014:4
Zm00001d041445_T007:4
Zm00001d041445_T020:5
Zm00001d041445_T019:3
Zm00001d041445_T002:4
Zm00001d041445_T012:5
Zm00001d041445_T022:4
Zm00001d041445_T016:4
Zm00001d041445_T013:4
Zm00001d041445_T004:4
Zm00001d041445_T006:4
Zm00001d041445_T008:3
Zm00001d041445_T005:3
Zm00001d041445_T018:4
Zm00001d041445_T017:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCTGATGACTTGAATAGCTGCACATTATGTGCTGAGTCTAAAGGTTTAGGTGGTGGTATAGG
CGAGAGATTGTTGATGAAATTGAACACAGGAGAATCagtttcaggcatttggacttcttacaac
tacaacgcttgcatgaagtgccatcaccactatcaaacttatgcctgcaaaatactattgcatt
ttatgaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1373
Transcript exons: 120200561-120200632,120200720-120201126,120201796-120202
519,120202615-120202784
AGTTTCAGGCATTTGGACTTCTTACAACTACAACGCTTGCATGAAGTGCCATCACCACTATCAA
ACTTATGCCTTTTCTTCTTGGGACTACCCTGACTAGAAGCTTCAGCGGTTGCAACATCAGTTGT
TTGAGTGAAATCATCATTTATAATGTTTTGCTCAGAAGGTGCCGGAGAAGATCCAGCAGGGCCT
ATCAAGTTACTTGATTCATTTATAGTAGACTGAATGTCTTGAGGGACTATTTTCTCTTTAGGTG
TTGCAGTTGCGGCAAGGGCATTCAAGTGCAAGCCAATACCAGGCAATGCACATGGGGGGGTTCT
TAGAGTCTTTGAGTTGTCACCAGAAATGGTTTTGCATTTGGGGGTAGTTGAATTTACAGGATGA
TGATCTGAAGCTTTGTCTACACCTTTATTACTAAGCCCAGCCTTTTCATTGAAAAGGCTGCGCC
TACGCATGCCACGTAAATGCTGTGACAAAGCATTTTGCTCAGTAGGCATGTAATCTTTTGGCTC
ATTGAGCTTGTTACATGGCATCAACTGACTTTGCAAAGCACCAGGAAGTGCTTGGGGAGTATAA
GCTACTGCAGCCCCTTCAACTGCCCCGTTCCAGTACAGATGGGGTTCATGCACAGAATTTTGGG
TGCAATTTCCACTTGACTGAACATCCAACAAGGATTCACAAGGGTAGGGATTATCAGCCTTTTG
TGTATCATTCATTGGTTGTGCTTCTGTTCCAGATGGTACGGCTAAAGTCAGCATATCACTACTT
GATTGGTGTGTAATCATGTAAACCCCATTATATGCCGCAGGTTCATCATTGTTTTGTTCAGATA
GCTGGTTTTCATGAACAACTATCCCAGAATGTGATGAATCCATTCTGTCTGGGCTACTCTCATC
AAGGTTCATACCTTCTAGGCCTGTGCACTCCTGGGACATGGTAAGGTCTATTTTACCACCAGCG
CATTGATCCTTATCGCTTTCCATACTGCCAGCAGCATCTTTTATGGATTGAGTCAATTGGCCTG
TAGAGCTTGATGTATGATCTGAAGAATCAATAGATGCCTCGTTTAGTTGACAAGTGATATTACA
ATTCTCTGGCACAATGTCTTTGCATCTGATCATTCTAAAAGAGCCTGAGGTGCCTATCCGAGTT
CTGACACTGCTAGGTGAGTGCAATTCATGAGGAAGCTGAACAGATTCGTCCCTGATCAGAACTT
TAGTTCCCTTTGTTGGATTAACATGTGGTGAGGCAAAGATCGAAGAAACAGGTGCCAAATCTGA
TGACTTGAATAGCTGCACATTATGTGCTGAGTCTAAAGGTTTAGGTGGTGGTATAGGCGAGAGA
TTGTTGATGAAATTGAACACAGGAGAATC

Genomic sequence AGTTTCAGGCATTTGGACTTCTTACAACTACAACGCTTGCATGAAGTGCCATCACCACTATCAA
ACTTATGCCTGCAAAATACTATTGCATTTTATGAATTTTCCAATGAAACAGTGCTATTTGACTA
AAATAGTAGGCAATAGGCAAAGATATAGTACCTTTTCTTCTTGGGACTACCCTGACTAGAAGCT
TCAGCGGTTGCAACATCAGTTGTTTGAGTGAAATCATCATTTATAATGTTTTGCTCAGAAGGTG
CCGGAGAAGATCCAGCAGGGCCTATCAAGTTACTTGATTCATTTATAGTAGACTGAATGTCTTG
AGGGACTATTTTCTCTTTAGGTGTTGCAGTTGCGGCAAGGGCATTCAAGTGCAAGCCAATACCA
GGCAATGCACATGGGGGGGTTCTTAGAGTCTTTGAGTTGTCACCAGAAATGGTTTTGCATTTGG
GGGTAGTTGAATTTACAGGATGATGATCTGAAGCTTTGTCTACACCTTTATTACTAAGCCCAGC
CTTTTCATTGAAAAGGCTGCGCCTACGCATGCCACGTAAATGCTGTGACAAAGCCTGAAATAGC
AGAAAACATGTCCTTTCATAAGAAAAAACATTGATAGTTCAGCCAAATTAGCACAGCCTATACA
AAACTAGATTTACAGGAAAGAAAATGATAGAAAGTAAAAGGCTGAATACTGATGGCAATCTTGT
TAGCATGTGGACACAAGATTATGCACAATTGAGAGCAATACAATGCACAAGGCACATGAATGGA
AAACTGCTAATAAACATGGACTTGCTAAATCCATTCTCCTACATATAGGCCGTGTTTGGCATGG
CTCCAGAGCAGAACTCCAAGAAGGAGCTAGAAAGAGCCTGCCAAACACCATAACTCCAGAGTTG
CAAACTTCATGGAGTTTTCTGATCTGTAGTAGAATTTTTTGGAGTACCTCTTTTGCTGCTCCGA
AAACTCTAAAAAAGCAACATCAACGTGGAGTTTAGAGTTATTTACCCGCTACTGTCACTGGTTA
TGAGACAACAATTTAAACTCTGGAGCAGAGCAGCTCTGAAGTGGAGCAGAGCCATGCCAAACAC
GCCCATGGTATCCAAGCTAATATTAGTTTGTAGTTTGTACATACAGATATATTGCACGAGTCTT
CGAATTAGATTAGGTCAATTAGCACAGAGCATTAGTAAAGCCAATATACAAAACTTCTAAATGG
CAACACAAAGCATACATACATTTTGCTCAGTAGGCATGTAATCTTTTGGCTCATTGAGCTTGTT
ACATGGCATCAACTGACTTTGCAAAGCACCAGGAAGTGCTTGGGGAGTATAAGCTACTGCAGCC
CCTTCAACTGCCCCGTTCCAGTACAGATGGGGTTCATGCACAGAATTTTGGGTGCAATTTCCAC
TTGACTGAACATCCAACAAGGATTCACAAGGGTAGGGATTATCAGCCTTTTGTGTATCATTCAT
TGGTTGTGCTTCTGTTCCAGATGGTACGGCTAAAGTCAGCATATCACTACTTGATTGGTGTGTA
ATCATGTAAACCCCATTATATGCCGCAGGTTCATCATTGTTTTGTTCAGATAGCTGGTTTTCAT
GAACAACTATCCCAGAATGTGATGAATCCATTCTGTCTGGGCTACTCTCATCAAGGTTCATACC
TTCTAGGCCTGTGCACTCCTGGGACATGGTAAGGTCTATTTTACCACCAGCGCATTGATCCTTA
TCGCTTTCCATACTGCCAGCAGCATCTTTTATGGATTGAGTCAATTGGCCTGTAGAGCTTGATG
TATGATCTGAAGAATCAATAGATGCCTCGTTTAGTTGACAAGTGATATTACAATTCTCTGGCAC
AATGTCTTTGCATCTGATCATTCTAAAAGAGCCTGAGGTGCCTATCCGAGTTCTGACACTGCTA
GGTGAGTGCAATTCATGAGGAAGCTGAACAGATTCGTCCCTACCAGCATGAAATACAAACTGTA
AGGCAGAGCCAAGACAGACACATAAAAGTCGAGATTAGCTAGAAAGCATAGAGAAAAGATGAAA
ATAAACCTGATCAGAACTTTAGTTCCCTTTGTTGGATTAACATGTGGTGAGGCAAAGATCGAAG
AAACAGGTGCCAAATCTGATGACTTGAATAGCTGCACATTATGTGCTGAGTCTAAAGGTTTAGG
TGGTGGTATAGGCGAGAGATTGTTGATGAAATTGAACACAGGAGAATC
Conservation Information
Conserved circRNAs NA
PMCS 0.092607997
Functional Information
Coding potential Y
Potential coding position 120202763-120200744(+)
120202439-120202726(-)
120200574-120202726(-)
Potential amino acid sequence MKLNTGESVSGIWTSYNYNACMKCHHHYQTYAFSSWDYPD*(+)
MIRCKDIVPENCNITCQLNEASIDSSDHTSSSTGQLTQSIKDAAGSMESDKDQCAGGKIDLTMS
QECTGLEGMNLDESSPDRMDSSHSGIVVHENQLSEQNNDEPAAYNGVYMITHQSSSDMLTLAVP
SGTEAQPMNDTQKADNPYPCESLLDVQSSGNCTQNSVHEPHLYWNGAVEGAAVAYTPQALPGAL
QSQLMPCNKLNEPKDYMPTEQNALSQHLRGMRRRSLFNEKAGLSNKGVDKASDHHPVNSTTPKC
KTISGDNSKTLRTPPCALPGIGLHLNALAATATPKEKIVPQDIQSTINESSNLIGPAGSSPAPS
EQNIINDDFTQTTDVATAEASSQGSPKKKRHKFDSGDGTSCKRCSCKKSKCLKLILLCSISSTI
SRLYHHLNL*(-)
MPETDSPVFNFINNLSPIPPPKPLDSAHNVQLFKSSDLAPVSSIFASPHVNPTKGTKVLIRDES
VQLPHELHSPSSVRTRIGTSGSFRMIRCKDIVPENCNITCQLNEASIDSSDHTSSSTGQLTQSI
KDAAGSMESDKDQCAGGKIDLTMSQECTGLEGMNLDESSPDRMDSSHSGIVVHENQLSEQNNDE
PAAYNGVYMITHQSSSDMLTLAVPSGTEAQPMNDTQKADNPYPCESLLDVQSSGNCTQNSVHEP
HLYWNGAVEGAAVAYTPQALPGALQSQLMPCNKLNEPKDYMPTEQNALSQHLRGMRRRSLFNEK
AGLSNKGVDKASDHHPVNSTTPKCKTISGDNSKTLRTPPCALPGIGLHLNALAATATPKEKIVP
QDIQSTINESSNLIGPAGSSPAPSEQNIINDDFTQTTDVATAEASSQGSPKKKRHKFDSGDGTS
CKRCSCKKSKCLKLILLCSISSTISRLYHHLNL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019