Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d041445_circ_g.4 |
| ID in PlantcircBase | zma_circ_007629 |
| Alias | zma_circ_0001144, GRMZM2G701689_C2 |
| Organism | Zea mays |
| Position | chr3: 120200561-120202784 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | find_circ, CIRI2 |
| Parent gene | Zm00001d041445 |
| Parent gene annotation |
Protein tesmin/TSO1-like CXC 2 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d041445_circ_g.5 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d041445_T010:4 Zm00001d041445_T015:4 Zm00001d041445_T014:4 Zm00001d041445_T007:4 Zm00001d041445_T020:5 Zm00001d041445_T019:3 Zm00001d041445_T002:4 Zm00001d041445_T012:5 Zm00001d041445_T022:4 Zm00001d041445_T016:4 Zm00001d041445_T013:4 Zm00001d041445_T004:4 Zm00001d041445_T006:4 Zm00001d041445_T008:3 Zm00001d041445_T005:3 Zm00001d041445_T018:4 Zm00001d041445_T017:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.092607997 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
120202763-120200744(+) 120202439-120202726(-) 120200574-120202726(-) |
| Potential amino acid sequence |
MKLNTGESVSGIWTSYNYNACMKCHHHYQTYAFSSWDYPD*(+) MIRCKDIVPENCNITCQLNEASIDSSDHTSSSTGQLTQSIKDAAGSMESDKDQCAGGKIDLTMS QECTGLEGMNLDESSPDRMDSSHSGIVVHENQLSEQNNDEPAAYNGVYMITHQSSSDMLTLAVP SGTEAQPMNDTQKADNPYPCESLLDVQSSGNCTQNSVHEPHLYWNGAVEGAAVAYTPQALPGAL QSQLMPCNKLNEPKDYMPTEQNALSQHLRGMRRRSLFNEKAGLSNKGVDKASDHHPVNSTTPKC KTISGDNSKTLRTPPCALPGIGLHLNALAATATPKEKIVPQDIQSTINESSNLIGPAGSSPAPS EQNIINDDFTQTTDVATAEASSQGSPKKKRHKFDSGDGTSCKRCSCKKSKCLKLILLCSISSTI SRLYHHLNL*(-) MPETDSPVFNFINNLSPIPPPKPLDSAHNVQLFKSSDLAPVSSIFASPHVNPTKGTKVLIRDES VQLPHELHSPSSVRTRIGTSGSFRMIRCKDIVPENCNITCQLNEASIDSSDHTSSSTGQLTQSI KDAAGSMESDKDQCAGGKIDLTMSQECTGLEGMNLDESSPDRMDSSHSGIVVHENQLSEQNNDE PAAYNGVYMITHQSSSDMLTLAVPSGTEAQPMNDTQKADNPYPCESLLDVQSSGNCTQNSVHEP HLYWNGAVEGAAVAYTPQALPGALQSQLMPCNKLNEPKDYMPTEQNALSQHLRGMRRRSLFNEK AGLSNKGVDKASDHHPVNSTTPKCKTISGDNSKTLRTPPCALPGIGLHLNALAATATPKEKIVP QDIQSTINESSNLIGPAGSSPAPSEQNIINDDFTQTTDVATAEASSQGSPKKKRHKFDSGDGTS CKRCSCKKSKCLKLILLCSISSTISRLYHHLNL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Ma et al., 2021b;Zhang et al., 2019 |