Detail information of Solyc08g014150.2_circ_g.1


General Information
CircRNA Name Solyc08g014150.2_circ_g.1
ID in PlantcircBase sly_circ_002486
Alias SL3.0ch08:3849623|3854178
Organism Solanum lycopersicum
Position chr8: 3854016-3858570  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc08g014150.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc08g014150.2_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Solyc08g014150.2.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGGAAGAAAAAACATATAAGATAATTGAAATTCACAAAATAGGTTGGTTTACTAACCATCAG
GATTTCCTAAAGGTGGTACCCCATGACCGCCTGCACcattgtatataccagataggacttcttc
tttgataaaaggctgagatttcccagtcattggcaaattttcttcctggctcatatccatcttt
ttatttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGTATATACCAGATAGGACTTCTTCTTTGATAAAAGGCTGAGATTTCCCAGTCATTGGCAA
ATTTTCTTCCTGGCTCATATCCATCTTTTTATTTCCTTTAACTGAGCTGCTATGTGCACGTAGT
GCTGACTGTTCCCTCTCCTAAAAGAAAACCAAGATGGAAAATGTGTGGGCATGGGGGTCATGAC
CGAGAAGATAAACATAGGTATAGAATGGAAAATCTAGGGAAAACTGTCATGACCAAAGGATGCA
CTATAAATAATAACAAATTTCTTAAATTCTAAGCTTTATGAACAAATTTAGAACTGCTGAGATT
AAGAACACATCTGCACATGATGTTGCTTCAACAAGCTCACAGATAAAATATTATTACACAACAT
CAGAAGTATGCAGCGACAACAACAAATTGTTATACCTCTTAGCAATATTTTGTAGCCTCCAAGA
TTAACAGAGCATTTCTTTGCTCTTCTGCTTGGCCAAAAAGTTGATAAGATGCTTATGAGAAATG
AAATATGAGCATCATTCTTGAGTAATAAAAAATATTTAGGCAAACAATAATTAACATGTAACTT
GGGACCTTCCTTACACAGTTACACAATGCAATCACATTGAAGAAACTCGTAAATGCTACTTCCA
ACATGTTTGCGTTGATTTACAACCAATCACTATTCCTTTCATTTTTGATAAAATACAAAAATAA
GATAATAAATACATACATATTAACCAGTAACCGTTCCTTTTTAAACCTAATTTATCAAACCCTA
TTTGAAACCAAGTAATCGGGATGTTATCAACATGGCAAAGATCTATACTAGAAGAGTGAGTTCT
AATGAAATAGAGATTATTGATATGAAGTTGCTGACTTGCCTCTGCCCTCAAAAGGCCCATGTCT
CTGATCCCGATGATTAAGATTATTGTCTAGGATTATATTCTTACAATTGATCAACATGAAAGCA
TGAAAGCAATCACCCTTTTTTCCTTGGAACAAGGATCTATTTTACAAGCACATAAAGTAGGGTG
CTTTATGTCATTCTTATGCACTACTGGGCAATTAAATCATCCATCACAAGTCAATACATGTACT
CTACTCCTTTCCTTTTTCTATTTTCTTTCTCTATATTCTACACAGCATTCTCATGCTCGCAATA
TACATCGATATGCCTGAATATTTATCACTCTAAACGGCTTCCTATCACGGTATAGCTCTTCATG
AGAGAACATCAATATGGTAATCAAAATCAAACAGCTATCCAAAGTCTTCTTCTTTCCTAGAGTG
TAAATAGAGATATTAACTATACTCGCAGAAATCTTCCATCAATTAGAAGTGAGATAAGATGATA
AATAGAAGAAAGACATAAATTTGATGTCTAGTATGCTAATGCATTAGAACTAGGTAGCTTACAT
GATACGTATCCTATATACTACATGACTCTTTTGGTATAGTTAACTTAAGTAGGAAATATTTCCA
ATGTGCAGCACAGTAACACAGGTGGGAAAGGATGCAATCACTTACTAGTTCACTGTCCTATTGC
ATCCAGATTATGGGTATGGTCTGGGGCATAAATTTGAGTGTAACATGAATTCTAGGGACTGCCG
GAGAGGTGCTTCTAGGATATAAATTGGGAGAAAGAGAAGGAAATCAGAAAATCTCCTCCTGCAC
TCATGCAGCTAATATGCGAAAGAAAATAGGAGAGCGTTTGACGGATAGAGAACTTGTTTGTATA
GATTATTGGAAATAACAAATTTTTACAACTTTGAAGCACTTAGTGATATTGTGTTGCTGTTGAT
GCTTTTTGTAGATACTTATCTCTTCCTTTTAGATTCTCTACATTTTGTATACTTGTATGTGGGA
TCCCCCCATCTCATTAATAAATTATAACTTCATCAACAAAAAAAAAAGAGGAAAAACACAGTGA
AGCAGGCAATTTGATTTGTAGGATGTTCTAGAAGCAACATTCATTAAGAATGTATAACTGATTA
ATATCTCAAATAATTAGAAAAAAGGACTAATTAAAAGCAGAGAAAATACCTTTTTCTCTGCTTC
TAGCATTTCATGGTAGTTCGTTGTTGAGCGTTGCAAGGCTCTAATTGCATGATTCCTATTCCAA
AAAGACGCAAACATATATCGTACTCGCCCTGGAAGTTGAAAAATTATGTGATTAGACAATAAAT
ATTAAGAATCAAGAATGTCAATATTAAATTCACCACTAACATGAGTTGAAATAAAGAACTTCTC
GTCTTCACAATTTGTATCTCGTTTTAACTTGAAAGACTATTGATAGAGGAGTTAATTGTGTATG
TTTTTTAGTTTGTTGTTAGCTTGAAGAACATGTGGTGCCAGCCAACAGGTAGATATTAGAGTTC
TTTTTTATTTTTTGTTTTTCCCTAAAAGCTTTAAGTATTAGGTGGGAGAAAAAGAAAACTTCCT
TTTTTTTTTACAAAGATAACAGTTGTGTATAAATCTTCAGCATTAAAGGCTGGGAACCCAAATT
ACATCATGGAACTACATACAGTTGAGCATACACAACAAAACTAAACTAGATCCTACTTCATCTT
TACAAAGAACCTATGATATCTATAATAGCTATAGGATCATCTACTTACTCAGAACAGCACCAGA
AAAACGTGATAATACAGGTCATCTTAATCCTGTGTAAAGGACTATTAATGCTCTCATAACATTT
CATATTTCTCTCCTGCCATATGGTTGGCCAAATCACTGCTGGGACAATTCTCCATCTGCTTTGG
TCTGTACTGCCACTACCTTCATTTTTCTAGCTTTCTATAGCTTAACTTGCCGTTTGTGGAATGG
TCCAACTTGTGCCCCTGAAGCTGGTAAACAAGTTCTAAAGTTGTCTAACCACCCTACTGTGAAG
AAACAGAACAGATGGTTGATTGTCTCTGCTTGTTTCTCACAAACAAAACACTAGGACACAATCA
CTCTTCATGAGATTATCCTAAGTTAGTGCTGCCTCTTTTACTACCAACCAAGTAAACATTGCCA
CCTTATATGGAATTTTGACTTTCCAGATAAGCTTCCAAGGCTAAAATCTCAGTTGAGGCTCATT
TGATTCAGATTCTTGTAGGCAGAGCTAACCGTAAAGATACCTTTGTTGTGATGAAACAACCTGA
GAGTGTCTTCTCCCTCTTTCAATCCTCCAAAATGATCTAGGGTGCCATAAAATTCAGCTAGTCT
ATCACCTCGAAATTATCTTAATAAATAATGCTCTATCACTCATATAACGTGTAAAGAATTAAAA
TTAAATTTAAACCCACATACAATCGCATATACCCCATCCCTCCCCACCCCACATTAGTTTTAAA
AAAAACCACTTCACCCGCCCCCCACAACCTTAAACCCACCCGCCCCGTCCCGCATAGCCTTAAA
CCAGCACCACCCCACCCTAACATCTGCCCCGCTCCATTGCCATCCCTAAAGTCACTTCCTTAGT
TTCCAGTAGTCTATCTTCTCATACTTGGCCTGAATCACTCTAACCCAAAGGGCCTGCTCCTCTT
CAGGAGATCTCCACAACCACTTCATCAAAAGGCTTTTGTTCTGTTTCTTCAAGTTTCTAATGCC
TAACCGAACTTATTTCTTTGAAAGATTTCCAGTCTTTTATTTAACCAAATGAAATCCTTTGTAC
TCTTCTCTCAGTTCCACAAAAGAATCCTCCTTAATGCATATTTCCTTCACCTTAGGTGGGAGAG
GAAACACTAACATCAAATCTGTTGGCAAAGCATCTAAGACTGAATTGATCAGGGCCAATCTTCC
ACCTCTAGACAAATACTGTGCTTTCCATCTGAGTAATTTTGGGTTATATGGTAATTAAAATTTC
ATTTATTATTTTTGATAATTAAGGAACAATTTTATCATCGAGTGAGCAATGAATTAAAAAAAAA
CCTATTTGGACAGTATAACCCAACTGCCATTCAGCATCGCCCAGACCCCACTTAGTGGGATTTC
CTGGGTATGTTGTTTTCGTCGTTACATTCAGCATAGCACCTACCAAACAAAAATAATCCTACAT
CACACTATTCTCTACTCTATATAGGGTAGAAGTTCCGGTGATCCAGCCAAGACTGCTGCTTATA
GCTCCTCTGGAATGAATGTCTTGGATTATCTGCTTCACGAGAGAATAAATGGACTGCTGCTTGT
TGTTGTAAAATATCATTTTTCTTAAAATAAAAGTAGATACAATTTTGGGTCAGTCATCATTTTC
TTTATAAAAGTAGATACTACACAAACGAAACTTGGAATGAACTTTAGACTCGCATTATCGTGCT
AGGAGTCTACAAGAGTTATACAAGTCAACAGAGAATCTCCTCCTAACAAATCAGTCAATCATTC
TACATCACAACCCAAAATCAGTCTGCACAGGGCTTCCCTCCTAACAAACCATAACTCAAAAGAA
CTGAAAAACTCATTCATTATCCAACTTGCCGACTCATTTGAAGGAAGAAAAAACATATAAGATA
ATTGAAATTCACAAAATAGGTTGGTTTACTAACCATCAGGATTTCCTAAAGGTGGTACCCCATG
ACCGCCTGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.141113264
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress
Other Information
References Yang et al., 2020