Detail information of Zm00001d015810_circ_g.1


General Information
CircRNA Name Zm00001d015810_circ_g.1
ID in PlantcircBase zma_circ_002036
Alias circ2140
Organism Zea mays
Position chr5: 122544217-122545078  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d015810
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand -
Alternative splicing Zm00001d015810_circ_g.2
Support reads 9
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d015810_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGTCTTAGGAAGTATACCCTTAAAACATTTAGATCCATTATGTCAAACTTAGCTCTTTTCTG
AATGATTCGCCGCATGTACTGTACAGCCATCTTAACccccatatgcctggtgaatacgatcaca
atggtgaggctgaataaacatatcattcagaccatgtccaaatagtacagggataaacatcttg
ggagccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCATATGCCTGGTGAATACGATCACAATGGTGAGGCTGAATAAACATATCATTCAGACCATG
TCCAAATAGTACAGGGATAAACATCTTGGGAGCCAACTGCTTATGAACAAGAGAACAGTTAGGT
TGACTTGAAGTATAAGCAAGTTCTTTCAAAGTTACAGTAGTTACAACATACAGAGATCTCACAA
TGAATGACTCAGACTAATTAAGGACCAGAGAGGTGTAAAATTGTCAATCCTGGCAATAACCAGA
TGGTCAGTTGGTTACTATTGACAACCTAGAAAAGAGAAACTCCCAAACTAAACAGTCTTTGGGT
TAAAAGAAAAAGAACAGATAATGCAAAACCTCAACTCTAAAATTGCTCAGAGCTATTTAAGGAG
ATTTTCAATAAATGCATGCCAAATACAGACATGGAAATAAACAAGGTTTTCCAGAATTTTGGTG
GAAATTCTACAATTAGAAAACATCCAACATGGAGAATGCAAATCTACAATCTGAAGTGAATCTG
ACTGCATAAAAGATATACAGAAGGAATTTATGATGACACTACCATATTAAAAGCAATTAAACAA
ATAGCTTACTGTTATCATTTATCAGTACTATTATATTCAATTTTACAGCAGCATGACATGGATA
ATACAATGCAAAATATAAACATGACTTGTACAAGCAAAAGACAGTTTTGCGACCATCATGAGTT
CAATTCTTCTTTGTTTTGTATTAAGGTTCCAAGGTGTCAAATTATGTTATGGAAAGATAATGTC
TTAGGAAGTATACCCTTAAAACATTTAGATCCATTATGTCAAACTTAGCTCTTTTCTGAATGAT
TCGCCGCATGTACTGTACAGCCATCTTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.021036833
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b