Detail information of BGIOSGA035749_circ_g.2


General Information
CircRNA Name BGIOSGA035749_circ_g.2
ID in PlantcircBase osi_circ_010031
Alias Chr12:26070878_26075600(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr12: 23006184-23010906  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA035749
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA035749_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-GA
Number of exons covered BGIOSGA035749-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCCAAAGTGGCGCAACAATGGATACAAAATAACAACAACTAATATCCGAGAAATTTGCACAA
ATACATAGAGCAGAAGAAGGAAGCCCCATGAAGCACcctttactactccaatcgaaacaagcca
tataccagttggccttgagccctctctataaaggattgtgccatgtccttttactgtttccttt
gtgctatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTACTACTCCAATCGAAACAAGCCATATACCAGTTGGCCTTGAGCCCTCTCTATAAAGGAT
TGTGCCATGTCCTTTTACTGTTTCCTTTGTGCTATTTAATAAAGGATCACGCATCGCAGCAGGC
AGTGCACCAACTAACGGATGAGTGTTCAAAAGATCACTGACTCTTGGCATTTTTACCAATGGTG
GATTCCTCTTGAACTTCTTCAAGTCTGTCTGCCAAGTGAATTGACTAGAATTAGTATTTCCATT
GTGATTTGTAACTGAAACAACAAAGTCAGCATAGTAATAATTAAAAGACAAGCAAAATATTCCA
GCCACCTGCAAAGCATCATCTAGATGGGCCATTTCCTTTTCTTCCAGCAACCCAGTCTTCTGGA
GATTTTGAATATACTCACTCAAGTGGGTCAATACCGAATATGTTACTTGTCGAGTCTTCAGCAC
ACGAAGCACCTGAAATCGTGGAACATTTTATTTATGTTGTGGTGTTTCTCTTGGTTAATATAAA
GATCACCTTAAATATGAAACACTAAGTAAATACTTTGTCTTTTGAACCATAAATAAATATTTTA
ATAACAGTTTGAATTTTGTTGCCTTTCATCTTCTTAATGAAACTTCCTACGTACTATTTTTTGT
TTGTTTGGAGAGTAGGATTTTCACATAAATTTTGCAATAGACAGTACAATTGATATGCCACATC
CTACGTACTATTTTTTGTTTGTTTGGAGAGTAGGATCTTCACATAAATTTTGCAATAGACAGTA
CAATTGATATGCCACATCAAATACACCAATCCAAACTTAAACCATTTCTCAGCATTTTGGTGTC
ATATAAGTACATGTAAAAACCAAAACTAGTCCCATTGCAGTTCAGCTCACCAGCTTATGACAGA
AGTACTATATTTTCCTTCCACCAGCTATTTCAGGAAAGAAGTTAGACTGGCAGGTCCCAGCACA
ACAACTTCATAATTTATAAAGTATAATTTATGACACATGGCATGATAACCTGGACATAGTGCCA
TTATGTCCATGTTTTGGAAAAAGAAAACTGTTAGTAGAATTGGGTATGAAGATTTTATGCTGAT
GACTGTAAACTCCATTAATAATCATATGATGGGAACAAACTGTAACCACAAACCTGAGGGAATG
TAACACGAACATCTTCCAAGAATTTTCTAGCCTCCTCTCCCTCAGCATTACTTTCATCAATAAC
AATTCTTGCAACCTCACTATCACCTGAAGAAAGAAGTGCATAAGAATGGAAACAGGTTCAAAGA
GCACTAGCATGACATGCAAGTCATCTGTACTAATGAAGGTGCATTCCAAATTATTAATAGAAAG
ATGCCTTCAACCAGGCTTCCATAGTAGTAACTTGCAAAACAAAGTAAACTTGACAGGTTCATTC
TTACTCCTTGCGAGATCATTTAAGCCATCCAAATTTCACTCTATAAAGCAGTTTTGCAGAAACA
AAAGCTATACCAACACATCAGGACCTGGCCAGTTTGACACTAAATTCTGTAGGAAGCATAACCC
TACAGAATTATAGGAAGCATAACCCTTGCTAGAGTATATATATTGCATCTTCATTGCATTTATA
AACTAAAGCAATGTACACCAAGAATATGTTCCACCCACATATATCTCATATCTCATATGCATAT
CATGTATTCAGGTGGATTTGTCTTTTACTCTTTCTGGAATTAGACCTCCAAATAAATGGCAGCT
AATATGCACAAACAAACATGAAATTTTTACCAAGAAAGTCATGTAGCTGCCGTCTTGCGATTCT
ATGAGCACGGAGAAATGCAGCACAGATGTAACATCCTGACTCCAGTCTTTCTACTGTGAAGTAA
GTGATAAGCCTTCGTGGCAACCTGCTCATTTGAAGGAACCTATAGTAATTTGGAAAATGGACAT
TGGACCGCAAACCCTTCCAGTCACATAATTCTTGGGTAGGAACAAGATCCATAGCTTCATCAAC
CGATCTCATTAAAATATTTGCAGTGGCTTGAGTTATTCGTCCTTCTTCAAGCATTCCCCAGTAA
GCAGCTTGGACACCTGTTTTTATTCATTCAGCATAGAACTCCGTAATCTAAGCAGCTTATCTAG
AGAATATAGAACAGTGAGAGAAATATTAATTGAACTATGTGGGAATAAAAAACTGAATGCAACA
AAATGGGTGTAAAAAATGAAAAGATAGGAAGCAAATAAGTCAAAGAAACTCTAATCCATCAATT
TGATAAAGTTTCATCAGAAAAAGAGATGATATATCTTATTGAAAGCCAAGTACCAAACGTATCA
CTAAACCAAAGGAAGCGCCCAAGGTTCAAGTATATCACCAAACAGATTAATAACCAGCAGGCAA
TGTAAAAAGTAAAAGATGCATCCTTAGTAAACATACCTAAGCTTTCCATATAGCATGTTACTGG
GAAAAATTAGAGAGCAACTAAGCAAAGTAACTAAAAGGGATATTGAACATAAAACATGACATCA
AACTTAAAGTCCAACTTGAAATAGCTAAATGATAACAAGAGACAATAATATAACAAAGGAGTGT
ATTAATATGTGTTCTATTTCGATCTCCAGGAAATATTTGTATCAAATTCCACCATCAGCACATT
ATAATGTAAGGTGATAACATACCATTTAGAAGCCGCACACGGATGTCCCTTAAGTTCATGGTAT
GCATGCGATCATTTCTGTCAGAAACAGCATGAGGATGCACAGGCTCATCGTCCAAGTCATTCAA
GCATGTGATATATTTCTTTACAGTAACCCAATCAGCAGGAGGACCAAGTTCCTCATCATCCCTA
AGATCACCAAAAGCCTCCAATGCCTTGTTTAGCATTTCATATTTTGTATAATTCAATATGCGAA
GCTGCAATAACAATAATGTTAGAATCTTTACCTGGAGTGTGAAGGGAATAACTTACTATATCAC
TAGTGGATACCCCCGCGCGTTGCAGCGGGATTTGAGAATTCTTACTGAGAAATATTGTTGATCA
ATCTTCGTGTGTTTCCTTTTTTTACTCATTGGTTGCGTGTTTTTTTTCCGACAAAATAATGTGG
AGTATGTGTTTATCAAGTGGGCCGCTTTCGTCCGTTGGCTGCTAAGAAAGAACGGAAAAAATTT
CTTCTGTTGCTTGCTGGGCCAACAGCCCACTGGGCGGAGACGTCAAGGGAGAGGTTCGTTCCTT
TTTTTTTTTTTGCCAATAGCAGACTGGATACATGCGATGTTTGAAGGCCATCCGATCAAGATCT
AACAGTTAATATGCGCCGATGACATGGCGAGCTGTGGTGCAAGCTTTATAGCAATTATGACTTA
GTGGGTACTAACTATATAGGAATAAGAGATATACAACCTAAAAATCAACATGACAACACCAAAG
AAAACCTATCCAGCTTGGACTTTGGAGCAGGTGATGGAAGAGGCTTTACAAACAACCGTAATCA
GTAAGAAAGGATCTGCGACTAACTTTTGAATTTATGCATAGTTCAACCATCTTTTCTAGGAGAA
AAGTAAGGGAGTTCTCCACAGGAAAATATTATATAAAATGAGAAATATTAGAAAAGCATTTACA
AGTTCTAAAAGATCAGAAACTGCCAAGAAAAGCAGGGAGAAGCTACAATCAGGGGCATACCTAC
ATGCATGTTCCTGGGTGCACATGACCCCGGATAGATTGTTCATCTCTAGCTGTTTTATGCCATC
TTAATAAATTAGTCAATGGTTAGATCATTAGTATGTATAGAACACCCGGTAATTTTTGTTTTAG
GTTCGCCACTGGCTACAATTGCTAATCAAAAGAGTTGAACAGAATGCTTGTTTGGAGAGGATGT
TCACAGGTAGAACCTTTGATTCTTTGGTGCTGATGGTCATTACAGTTCTTGTCAAGGATAATGA
AAAATCAATCATTCCAGATAAAAAAAATGTCTTTCAACGTTATAGGCAACATGATCATAGTTAT
GTACAAATGCAAAACTGAGAACCCTAAATATTTAAAAAGTGTTGGACTTAAAGGTACTAGACTA
AAATATATCTCACGTAAAACCTTAAATTTGCCAACTCACTAATTAATACAAAGGAGATGGCAGA
TTGGTACCAACTAGAAATCAGAAAGTTTATAAAGCAGAGAAATCTATGGACAAGCAAAAAAATT
ATCCCAACAGGAAAAAAATAATCATAGGTAACAATTCATGAAGCTAACCTTTGTTGCTGCTAAT
CTGTCCATTCCAAGTAGATGCAACAAAAATTGTGTAGTAGAACCATTAAAAATCAATGTCAAAA
ACACGATGCCACCAGTGAAGAACACAAACTGCAAATATGTAGCATTAGTAAAGGTAAAATCAAA
CATTTCAAACTTCTCCATAAAAAAAAACAGCATACCATTGTTCCGTCAACTGGTTTCAGATGGG
TCTGAACTGCATCACTAGCACGCTAGTAAAAAAAGGGTAGAAGATTCAGAAATATTTATAGTAT
AATAATGTAAATACAATGAAACAATAAAAGGTTGGCTGGTACAAGGATAATAACTTACCTTAAC
AGATAATGATAGAGACAGAGCAACAGCCCCTCGCAGTCCCGCCCAAACAAGAATTGTGGCTTCT
TTCAAGTCCAAACCATACCCAAAGTGGCGCAACAATGGATACAAAATAACAACAACTAATATCC
GAGAAATTTGCACAAATACATAGAGCAGAAGAAGGAAGCCCCATGAAGCAC
Conservation Information
Conserved circRNAs osa_circ_012549
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021