Detail information of AT2G03150_circ_g.9


General Information
CircRNA Name AT2G03150_circ_g.9
ID in PlantcircBase ath_circ_012656
Alias NA
Organism Arabidpsis thaliana
Position chr2: 956489-956581  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, CIRI-full
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues aerial
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03150.1:1
AT2G03150.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAGGAGATACTTCCGGCACTCCGACAACTGGAACTAAGAAGACTgttaagaaagatactgtt
gaagtaaccaaggatgcagagaaaaagtc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 93
Transcript exons: 956489-956581
GTTAAGAAAGATACTGTTGAAGTAACCAAGGATGCAGAGAAAAAGTCACCAGGAGATACTTCCG
GCACTCCGACAACTGGAACTAAGAAGACT

Genomic sequence GTTAAGAAAGATACTGTTGAAGTAACCAAGGATGCAGAGAAAAAGTCACCAGGAGATACTTCCG
GCACTCCGACAACTGGAACTAAGAAGACT
Conservation Information
Conserved circRNAs NA
PMCS 0.365655402
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017