Detail information of BGIOSGA033413_circ_g.1


General Information
CircRNA Name BGIOSGA033413_circ_g.1
ID in PlantcircBase osi_circ_008671
Alias Chr10:23421789_23422030(MH63RS2), Chr10:23925859_23926100(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 20564665-20564906  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA033413
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033413_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033413-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCAAAGCAATGAGAAGAAAGAACAGCCAAGTCCTGTATCGGTTCTTGATTCATTCGATGAAG
ATGACAGCTCTCCTGAATGCAAAACAATGAAAAAATggaaatattagaaggaactgaaggaaaa
gaacctgttcaaatgttcatgagctctcctgagagcatggttgaaaatttggagcaacaagatc
caaaaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAATATTAGAAGGAACTGAAGGAAAAGAACCTGTTCAAATGTTCATGAGCTCTCCTGAGAGC
ATGGTTGAAAATTTGGAGCAACAAGATCCAAAAACACCTGAACCAAAATCATCACCAAAATTAC
CAGATGGTTGTCCTGAGCAAAGCAATGAGAAGAAAGAACAGCCAAGTCCTGTATCGGTTCTTGA
TTCATTCGATGAAGATGACAGCTCTCCTGAATGCAAAACAATGAAAAAAT
Conservation Information
Conserved circRNAs osa_circ_007925
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021