Detail information of BGIOSGA014493_circ_g.1


General Information
CircRNA Name BGIOSGA014493_circ_g.1
ID in PlantcircBase osi_circ_014703
Alias Chr04:30139454_30141602(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28229502-28231651  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014493
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014493-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGCTGTGAAGCATTTAGGTTTAACTTCTCAAGGCCAAGGAAATCCATTGATCCATGTTTCAA
GCACTGAGATACTTGGGATGAGTTGTCTTCCACTACcttagcccttgtcagagccacatttgtc
cgctgcaagtttgtgagaaacccaactgaaccagctccattgctcctcactgttgatatgataa
tgatatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGCCCTTGTCAGAGCCACATTTGTCCGCTGCAAGTTTGTGAGAAACCCAACTGAACCAGCT
CCATTGCTCCTCACTGTTGATATGATAATGATATCTTCCTCTGCACCTTGGAAACCATCCACGG
ACTTCACTTTCACAGAAAAGCCGTCATACATATTGTAAGATTTACCGACTTTCTCCTGGATAGC
TCTAACTTGAGCATTGTATGGGGACACAACACCAACAGAGAGCTTGCTTTGTGTAGAAACTGCT
TCTGAAATTACAGAAACGAAAATGAATACTAGGAGTTATTTGGACTGGGTGTACGTCACACATA
ACAGCACTCTCTTTTTTTACCTGAGACAATGTACTCATTATTATAAGAGATAAAGCACTAGAAC
TAGAGCTACAGTACTGTCAGTTACCTTTGAATAATCTCTGAACTATTCTCAAAACTGTAGCAAC
TTCTATTGTGTTTTTCAGGCTACGACAATTCTTCTCAGTTGTTTCATGACCCCCATCTACATTA
ATAAACGAATATGGCCCAAATATTTTGCTTGCTAAAAACTTCCTTTCATAATTCTTACTAGTGA
CATTGGAGCCGTCAGATATCTTGCCATCATAAAATGTAGCAACTGGAAACCTGCTTATTTCTGG
ATGCATCCTGTATTGGACATTGAGACCTGTAGCCCAACAAACTTAGCCTCTCAAAAACACTTCG
TCCAAAGCAAGCATTGTCAGCTATCTACAGAATCATAATACATGTCAATGAATTGCTTCCAAGT
AGAAAATAAAGAAAAGAGTAACAAAATATGGAATCAACAGTGCTTACTTTGCTTTTCACCAAAG
CAGGTAGCTGATATTCATCTCCAATGAAAACAGCCTGCGTAATACCAGGAAGCTGCAAAGGAAT
TAAGGTCTCACACTCTTTGAGTTGTGCAGCCTCATCAACAATTAGCATCTCCAGAAGATTTGCC
TTTTCAGGCTGCTTGAACGGTCCACATATGCCCGAGGGAGAAACATCCATGGGCACGTTGTACA
GCCTGAAAGAGCTAGAAACCGTACAGAGAATGCATTTTGTTCTTTGCAGCAGATAGAGTTTAAT
TGGCTGTATACTGTAACAATTTGGAAGCTCCAAGTTCTTGACGAGATATTTTAATTCTTGCACA
CACAGCAATCTGGCAAGCCTGAACTTGGATTTAATGCATGTGCTAGTTTGCACAGAGACTAACT
GCTCAGACCACAAAACAGGATCACTATCCTCTTCTATCATGGTTTCAAGCAGTTCATCTGACCA
TATATCAGCATTGCCCTTATAGCAGTTTATCATTCCATGAAGAATTTTGATCAATTCAAGTACC
TCCAGCATACACTGAAAGCTCCGTTCTGTTCCTGAATTTCTTGGATGATTGTTGTACAGTATCT
CAATGCAATAGCTCAAATTCTGAGAAAGGTTGTTGTAACCATCTTTCAAATAATCTTTGAATGG
AAGCAATCTGGATGGCTCTTCCTTATCTTCAGGTCTCCCACATTTCTTCTCACAGCTACCATTT
CCAAATTGCATTCTCCAAGGAACATTTTCACCTTTATCCTTCTCAGCAGTCTCCTTTTCTATAT
CCTTCCTTTTCTCAAGTACATCCTCAATGTAATACTTGTACTTGGTCACAGAATTCTCAAGAAG
ATCTATCAGTGAGCACAAGCAATGCCTCCAACCCGTGTTTGGCACAAAACATGGTAACAATCGC
TCAGCACGAGAGTCAAGAAATATCACAGAAAGCTCATGACCATCATCTATCTTCATCCTCTTTT
TGTTTCCAAACAGAACAATATCACTTAGGAAGCAGGCACTACCATCTGAACATCCCCTAACAAG
ACGGACAATTCGAGATGCTACCTCCAATATGGCAGTATTGGTAGGTGCACAAGTAAGTGTCTTT
CGGCCTTTGATGAGCATTGCCCACAATATAGTGCTGATGGTTTTGGTTTTACCCGTCCCAGGAG
GGCCCCATATCAGTTTTAGGGAAGACAATTGGTTCTCCATTACTGAGACACAATCTGCTACTGC
ATTCAGCTGTGAAGCATTTAGGTTTAACTTCTCAAGGCCAAGGAAATCCATTGATCCATGTTTC
AAGCACTGAGATACTTGGGATGAGTTGTCTTCCACTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021