Detail information of Os05g0536225_circ_g.5


General Information
CircRNA Name Os05g0536225_circ_g.5
ID in PlantcircBase osa_circ_042163
Alias NA
Organism Oryza sativa
Position chr5: 26630940-26631121  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0536200
Parent gene annotation Voltage-dependent anion channel. (Os05t0536200-01)
Parent gene strand +
Alternative splicing Os05g0536225_circ_g.4 Os05g0536225_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered Os05t0536225-00:1
Os05t0536200-01:1
Os05t0536225-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCAACAACTTTGGCATGGCCAGTGCGCTCATCCAGCACGAGTTCAGGCCCAAGTCGCTCGTC
ACCATCTCCACTGAGGTTGATACCAAGcagagctggctcacagcttctcgagcaacgagaacac
tctcaccttcgggacacagcatgccctggatgaactcactactgtgaaggcgcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 182
Transcript exons: 26630940-26631121
CAGAGCTGGCTCACAGCTTCTCGAGCAACGAGAACACTCTCACCTTCGGGACACAGCATGCCCT
GGATGAACTCACTACTGTGAAGGCGCGCTTCAACAACTTTGGCATGGCCAGTGCGCTCATCCAG
CACGAGTTCAGGCCCAAGTCGCTCGTCACCATCTCCACTGAGGTTGATACCAAG

Genomic sequence CAGAGCTGGCTCACAGCTTCTCGAGCAACGAGAACACTCTCACCTTCGGGACACAGCATGCCCT
GGATGAACTCACTACTGTGAAGGCGCGCTTCAACAACTTTGGCATGGCCAGTGCGCTCATCCAG
CACGAGTTCAGGCCCAAGTCGCTCGTCACCATCTCCACTGAGGTTGATACCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.241373352
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study