Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0650000_circ_g.2 |
ID in PlantcircBase | osa_circ_020825 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 25202750-25205974 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | Os03g0650000 |
Parent gene annotation |
Similar to Yabby9 protein. (Os03t0650000-01);Similar to Yabby9 p rotein. (Os03t0650000-02) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 20 |
Tissues | shoot, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0650000-01:3 Os03t0650000-02:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_013372 |
PMCS | 0.097522266 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25202763-25205971(+) 25202809-25205957(-) |
Potential amino acid sequence |
MHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKAN NPDISHREAFSTAAKNDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQ RVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNDNLKMHNMSFRENYSEYGSSSRYGRVPM MFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNDNLKMHNM SFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDI SHREAFSTAAKN(+) MSHIQSSFRGSSYCASSNCHSLLQY*(-) |
Sponge-miRNAs | osa-miR1846e osa-miR164c |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |