Detail information of Os03g0650000_circ_g.2


General Information
CircRNA Name Os03g0650000_circ_g.2
ID in PlantcircBase osa_circ_020825
Alias NA
Organism Oryza sativa
Position chr3: 25202750-25205974  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os03g0650000
Parent gene annotation Similar to Yabby9 protein. (Os03t0650000-01);Similar to Yabby9 p
rotein. (Os03t0650000-02)
Parent gene strand +
Alternative splicing NA
Support reads 20
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0650000-01:3
Os03t0650000-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACCCACTAATATATCACTACAGGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATA
AGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATgacaatttgaagatgcacaatatgagct
tccgcgaaaactactctgaatatggctcatcttccagatatggccgagtgccaatgatgttctc
aaaaaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 252
Transcript exons: 25202750-25202876,25205693-25205741,25205899-25205974
GACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCA
GATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACC
TCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGG
ATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAAT

Genomic sequence GACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCA
GATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACG
TAAGACAATGCATATGAACCTGCATAATAAATTTAGTGTACATGTGCGACGGAGCCATATTTCT
AGAGATTATTGATTTTACTATATGAAGCAATATAAAGGTATACAAATGCTAGGGGAATATTGCA
TATATTCACATATACATGCTGGGTGCATATACCACTTTTCTTCTCCAAACCCTTTTTATCTTTG
TTGTTTTGCTCAGACAACTGGGGTACGTGTGTTACTTCTTAATTAACACAAATACATGTATAGA
GAAATTATACTGGCTTAATCAATTCCTGAGTTATGCACCTTTTTTTAAACAGATATATTTAGAA
AATTCGACGAGGGATAAAGCTCTACTAAAAAGTCAGAAAAATAGAAAATTTAAACAAGTTGCAT
TGATTCAGCTAGAGGTGGATAATAAACTAGCTAGGCTCACAAGCTGGCTTGTTAAGCTCGAGTT
TTATATCAATTTAACATGTATTAATCTATTATATGTTCACATAATAGTAAACACTACTCCCTCT
GTTTCATATTAAAGTCGTTTCATATTATAAGTTATTTTGATTTTATAAAAAAAGTCGTTTTGAT
TGTTTTCCTAGCTAGTCAAAGTAATTTAAGTATGACCAAGTTTACAGAAATATATAGTAACATT
TCTAATACAGAACAAACATATTAAAACATATTCAATGCTAGATTTAATATAACTAATTTGGTGT
TTTAAGTGTTGCAAAAGGTTTCTATAAATTTAATCAAAACTTTAAAAAATTTTGACTAGAAAAA
GTCAAAATGACTTATTACGTGAAACGGAGGAAGAGTAACTAGTAAAGTACTAACTAGACATGAA
AAGTTTGAAAGTAATTTCAAGAAGTATTATCCATAGTATAAGTATTGACTAATAGGCACTCGGT
ATATATGGAAAATATGGTGTGTCTAGTTAAGCTAACAAGCTAAAAATCCATCTCACGAGTTCGA
GTCGATCAGCCAAGCCACAAGCTTTGAGTTTTTTTCCCCAACCCTAGCTAGGCTTAGGCCCTCT
TTGTTTAGGCTTATAAGCTAACTTATAAGTCGAAAAGTCTAAGCCTAAACAAACAAACAGCTTT
TCTGTTTGGCTTTTTTGAAGCCATAAGCCACTCTAACACTATTAAGCCAAAAGCTAGGTTGGAG
AAGCTTTTTTGTCTTATGTGAGATAGATGTATGACTCAACTACTAAACTTAGGACATTAAATCC
ACCGGCTTATAAATCATATAAGCCAATAAGCTGACTTAAAAGTCTAGGCCAATAAGCTTAAGCC
TAAACAAAAAGGCGCGTCTGCTGTTATTGATCAGGTTGAGTTCTGTTAAAGTTTATGGTCCCCA
TCGCTTGGCTTATTTCCTAATAAGCCAAAACGGCTTATTAGGAAATAAAAATGAATTTTTAGGT
AAAACTTTTATAATTGTGTTTTTGGTGACTTAAAAGCCAATGTTGAAAAAGAAACTACGTTGAA
AATATCTCAAAATCAATCTCAAAATTAAGCTTGAAAATTCAAATTTTGGCTTTTTCTTTAGCTG
ATTAGGCCATCCGATAGGAGCCATCCGATAGGAGCCTATACTGGGCTGTATATAGAAATTATTC
TTATATGAATTAATGAATGAAACGAGATGTGCATGTGTGCGTGAGTTCTAGCTAGTAGCTAGTA
CCATGCATGGTTCGGTTAAAGATTTTTCCGTGCGGTCAAAATGCATTTTTCAGTGCGGAGGTCC
CGCCCGACTGTACCCTGCATGTCTGCGAAAATCCATATTTTCACGTGCGGGCGGCCTAACCGCA
TGAGATAATCCATCTTCCCGTGCGGTCGGGTTAAGTAGACCACACGGGATAATCGATTATCCCG
TGCGGTCAAATTATACCGCCCGCACGCAAAAAAAACTGAAAAAAAAAATAAAATAAAAAACACT
AACCCTAACCCTAGAAATCTAGAATCGCCCGCTGCCGCCGCTCGTGTTCGCCATCGTCCTCATG
TCGTCGTCGTGGTCGCACCGTCGCCGCTCTCATCGTCGTCGTTGTGGTCGCGCTGCCGCCGCTC
CTGGCCGCCGTCACTGCTCCCGGTTGCCAGCACGGCGCGGATCCGACCGGTCACCCACCGCGCT
GTCTCCGCCAGCAGCCGTCGTGCCGCCCGCTCCCGGCCGCCGCCTCGTTGGCGGCAAGCCGGGC
AACTCCCGCGCCCCGTGCGCTCGGTGGGGAGGGGAGGAGCTAGAGGAAAGGCAGAGAGAGAGAG
GAGTGATTGAGGGTGAATAAAAGGGAAAATGAATAGAGAAGATGAAAAATTTAAAGTGAGTAAG
AGAGAAAAGAGGGAGAGGTATTTTTGCGTGCGGTCCACTTAAGAGGCCCGCACGTGAAAATCGG
TTTTCGCGTGCGGGCCTCTTAAGGGTCAACACGCAAAAATAGGCTTATTTTTGCGTGCGGACCG
TTAAGAGGCCTGTCTGCGAAAATCGATTTTTGCGTGCGGGTCTCTTAAGAGTCCGCACGCGAAA
ATGGGAGGCCAATTTCTGCAGACGCGCGCGAAAACGGTCCGTCTGGGAAAATGGAAGCTCCTTG
TCCAGAAAAATGTTTTGTGTACTTGTATATATTTGAAAATACTGATGCATGAACTAGCTACTTG
AGTACTATTTCATTTTGTGAGCCCAAAAATATTGACGTACGAACTACTTGACTACTACGTACTC
CTATTAATTTCTTGAAAAACCTAGGAGTAGTATACATACTCTCAAGAGTATGTGCTTTAGATAG
TAATTAAACAGTATCTGGATGCTTATACTTTTTTTTTACAAATCTTTTTCATACAACTTGCAGC
TCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGTGAGTTTGATCTCGA
GACAATTCGATCGATCCATATATATATATAGATCGTCTAGACAGCTTATAACATCTGAGAGTTT
TCAGATAATTGATATAAATCTGCCGTATTCTATACTAAGTGTGTTTGATTTTGACACCCACTAA
TATATCACTACAGGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGA
AGCCTTCAGTACTGCAGCAAAGAAT
Conservation Information
Conserved circRNAs osi_circ_013372
PMCS 0.097522266
Functional Information
Coding potential Y
Potential coding position 25202763-25205971(+)
25202809-25205957(-)
Potential amino acid sequence MHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKAN
NPDISHREAFSTAAKNDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQ
RVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNDNLKMHNMSFRENYSEYGSSSRYGRVPM
MFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNDNLKMHNM
SFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDI
SHREAFSTAAKN(+)
MSHIQSSFRGSSYCASSNCHSLLQY*(-)
Sponge-miRNAs osa-miR1846e osa-miR164c
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017