Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G07910_circ_g.14 |
ID in PlantcircBase | ath_circ_001237 |
Alias | Chr1:2453083|2453408 |
Organism | Arabidpsis thaliana |
Position | chr1: 2453083-2453408 JBrowse» |
Reference genome | TAIR10.38 |
Type | ei-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G07910 |
Parent gene annotation |
RNAligase |
Parent gene strand | + |
Alternative splicing | AT1G07910_circ_g.3 AT1G07910_circ_g.4 AT1G07910_circ_g.5 AT1G07910_circ_g.6 AT1G07910_circ_g.7 AT1G07910_circ_g.8 AT1G07910_circ_g.9 AT1G07910_circ_g.10 AT1G07910_circ_g.11 AT1G07910_circ_g.12 AT1G07910_circ_g.13 |
Support reads | 2 |
Tissues | seedling |
Exon boundary | Yes-No |
Splicing signals | GA-GA |
Number of exons covered | AT1G07910.1:1 AT1G07910.2:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.119120654 |
Functional Information | |
---|---|
Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
---|---|
References | Zhang et al., 2020 |