Detail information of Zm00001d031873_circ_g.3


General Information
CircRNA Name Zm00001d031873_circ_g.3
ID in PlantcircBase zma_circ_006737
Alias Zm01circ00126, zma_circ_0000366
Organism Zea mays
Position chr1: 204969766-204971339  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d031873
Parent gene annotation Ribonuclease E/G-like protein chloroplastic
Parent gene strand -
Alternative splicing Zm00001d031873_circ_g.4
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d031873_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGGAGTATACTGGACCTGGCCTCCATATAATATCAGAAGAGGAACTCATTTCTTCTCGAAC
AAAATAACTATATTTGAAATGCACTCCATATGGTACccaaaatcggcttcgcaggcatggaaat
ggactaagtgttggacctttcgtacccaatccttctttgacaacttgaaccattacttttgtgc
ccttgcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1467
Transcript exons: 204969766-204970922,204971030-204971339
CCAAAATCGGCTTCGCAGGCATGGAAATGGACTAAGTGTTGGACCTTTCGTACCCAATCCTTCT
TTGACAACTTGAACCATTACTTTTGTGCCCTTGCGAACTTGAGACCATCTGCTTCCATTTGTGT
CATCATTAGATTCTCTTAAAGCATGCTGAATTGAAGATAAAGTCTTGAGATCATTGGAAATTTC
TGATTGATATCCTTGCAGTATGCCCTCACTATATTCATCTTCCATGTGGTCATTTTCTTCATCT
TTGTCTACGTCATAAACAGAAATGCTGTCAACTTCATCATCATCGACATTGTTATCTGTAACAT
TCTCAACTGGAAATGATGAACCATCATGAGCTTCTTCATCTGCAAATTCGTCGTCACTCATATC
ATCATCGTTTTCATAAGCTGGAAGGTTCTCTTCATTACAATAATCACCAACATGATCTGTTCCT
CGGTTCTTAAAAACTTGAGGATACACAAAAGGATCTCGGTTTTGCTTTATGCTCATAAGTGAAG
GCCTTGAAATTCCAATATCTACAAATGCTCCTCCCATATGAGGAACGAGCTTTGTTACTACACC
TAGATAAATACTATCACACTGTACATTGTTCTTGATGGGTTCCAGCAAGAGTTCAACTAGTTTT
CCATCTTCTAATACTGCAATTCTCTGCATAGTGCAGACAGAGGAATTCATAAGTATAACTCTTG
ATGACGGTTCACCACCAGTCGGTTTACTCTCATCCAAAGGCGTTAAAGGTTTTTCTATTTTCCT
TAATTTTCTGATAATGTCCCTTGCTTCTACTTTTCCATCAGCAAGAACTATAGTTTCATTTAGT
TCCAATATAGATTGAAATAACCATGGCTCTTCAACAGGCTGATACTGTTCATGCATGTTTTTAC
TAACTCCACTCAAAGTGTGCTTATAATTTACAAGCTTCTTTTGCCCTTTCTTATCTTTGACTTT
TGCAACTGGTTTCTTTGCAGACACAATTGATTCAAGAATCCATGGCTCCTCTACGACTTGAGGC
CTTCCATATTGGCTTATATAACTGGCATTTGGTATTTCAGTTACACAGTTGTGCATGATGGTAG
ATTGATTATCCGACAACAGTTTTGCATGTAATGGTGTGCCATTCCCAAGCTTCAATATAATATG
ATCACCTACAGATAAGCCTTGATTCCGTGTATCCCTGACAGAGTGATCTTTCACAATGTTCTGG
TTATTTCCACCATCAAAAAGTTCACCTTCAAGAGAATCAGCTTCCATCAGCCATGATCCCCATG
TAGGAGTAGGAAGACCTGGTAGACTGGTTTTCATCCATAGGTCTTTCACAATAATAACCTGCTT
TTTCTGGCCATCTGAAGGTATTGATAAGGAGTATACTGGACCTGGCCTCCATATAATATCAGAA
GAGGAACTCATTTCTTCTCGAACAAAATAACTATATTTGAAATGCACTCCATATGGTAC

Genomic sequence CCAAAATCGGCTTCGCAGGCATGGAAATGGACTAAGTGTTGGACCTTTCGTACCCAATCCTTCT
TTGACAACTTGAACCATTACTTTTGTGCCCTTGCGAACTTGAGACCATCTGCTTCCATTTGTGT
CATCATTAGATTCTCTTAAAGCATGCTGAATTGAAGATAAAGTCTTGAGATCATTGGAAATTTC
TGATTGATATCCTTGCAGTATGCCCTCACTATATTCATCTTCCATGTGGTCATTTTCTTCATCT
TTGTCTACGTCATAAACAGAAATGCTGTCAACTTCATCATCATCGACATTGTTATCTGTAACAT
TCTCAACTGGAAATGATGAACCATCATGAGCTTCTTCATCTGCAAATTCGTCGTCACTCATATC
ATCATCGTTTTCATAAGCTGGAAGGTTCTCTTCATTACAATAATCACCAACATGATCTGTTCCT
CGGTTCTTAAAAACTTGAGGATACACAAAAGGATCTCGGTTTTGCTTTATGCTCATAAGTGAAG
GCCTTGAAATTCCAATATCTACAAATGCTCCTCCCATATGAGGAACGAGCTTTGTTACTACACC
TAGATAAATACTATCACACTGTACATTGTTCTTGATGGGTTCCAGCAAGAGTTCAACTAGTTTT
CCATCTTCTAATACTGCAATTCTCTGCATAGTGCAGACAGAGGAATTCATAAGTATAACTCTTG
ATGACGGTTCACCACCAGTCGGTTTACTCTCATCCAAAGGCGTTAAAGGTTTTTCTATTTTCCT
TAATTTTCTGATAATGTCCCTTGCTTCTACTTTTCCATCAGCAAGAACTATAGTTTCATTTAGT
TCCAATATAGATTGAAATAACCATGGCTCTTCAACAGGCTGATACTGTTCATGCATGTTTTTAC
TAACTCCACTCAAAGTGTGCTTATAATTTACAAGCTTCTTTTGCCCTTTCTTATCTTTGACTTT
TGCAACTGGTTTCTTTGCAGACACAATTGATTCAAGAATCCATGGCTCCTCTACGACTTGAGGC
CTTCCATATTGGCTTATATAACTGGCATTTGGTATTTCAGTTACACAGTTGTGCATGATGGTAG
ATTGATTATCCGACAACAGTTTTGCATGTAATGGTGTGCCATTCCCAAGCTTCAATATAATATG
ATCACCTGCAAATCCACTGGAAAGATTTAAGTGTTCAGAACAGCTAAAGAAGAGTTAATATCCT
GATACTCGTTATTGCCATATTCTAGAAGATGTGGTAATGCAACATTACCTACAGATAAGCCTTG
ATTCCGTGTATCCCTGACAGAGTGATCTTTCACAATGTTCTGGTTATTTCCACCATCAAAAAGT
TCACCTTCAAGAGAATCAGCTTCCATCAGCCATGATCCCCATGTAGGAGTAGGAAGACCTGGTA
GACTGGTTTTCATCCATAGGTCTTTCACAATAATAACCTGCTTTTTCTGGCCATCTGAAGGTAT
TGATAAGGAGTATACTGGACCTGGCCTCCATATAATATCAGAAGAGGAACTCATTTCTTCTCGA
ACAAAATAACTATATTTGAAATGCACTCCATATGGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.207752731
Functional Information
Coding potential Y
Potential coding position 204971323-204969909(+)
204971293-204969768(-)
Potential amino acid sequence MHSIWYPKSASQAWKWTKCWTFRTQSFFDNLNHYFCALANLRPSASICVIIRFS*(+)
MSSSSDIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFD
GGNNQNIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYIS
QYGRPQVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQ
SILELNETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAV
LEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQV
FKNRGTDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVY
DVDKDEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMV
QVVKEGLGTKGPTLSPFPCLRSRFWVPYGVHFKYSYFVREEMSSSSDIIWRPGPVYSLSIPSDG
QKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFDGGNNQNIVKDHSVRDTRNQGLSV
GDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYISQYGRPQVVEEPWILESIVSAKKP
VAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQSILELNETIVLADGKVEARDIIR
KLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSI
YLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRGTDHVGDYCNEENLPAYEN
DDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDKDEENDHMEDEYSEGILQGY
QSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVVKEGLGTKGPTLSPFPCLRSR
FWVPYGVHFKYSYFVREEMSSSSDIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTP
TWGSWLMEADSLEGELFDGGNNQNIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQ
STIMHNCVTEIPNASYISQYGRPQVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGV
SKNMHEQYQPVEEPWLFQSILELNETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPS
SRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISR
PSLMSIKQNRDPFVYPQVFKNRGTDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVE
NVTDNNVDDDEVDSISVYDVDKDEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESND
DTNGSRWSQVRKGTKVMVQVVKEGLGTKGPTLSPFPCLRSRFWVPYGVHFKYSYFVREEMSSSS
DIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFDGGNNQ
NIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYISQYGRP
QVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQSILEL
NETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGK
LVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRG
TDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDKD
EENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVVKE
GLGTKGPTLSPFPCLRSRFW(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020; Ma et al., 2021b