Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d031873_circ_g.3 |
ID in PlantcircBase | zma_circ_006737 |
Alias | Zm01circ00126, zma_circ_0000366 |
Organism | Zea mays |
Position | chr1: 204969766-204971339 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d031873 |
Parent gene annotation |
Ribonuclease E/G-like protein chloroplastic |
Parent gene strand | - |
Alternative splicing | Zm00001d031873_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d031873_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.207752731 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
204971323-204969909(+) 204971293-204969768(-) |
Potential amino acid sequence |
MHSIWYPKSASQAWKWTKCWTFRTQSFFDNLNHYFCALANLRPSASICVIIRFS*(+) MSSSSDIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFD GGNNQNIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYIS QYGRPQVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQ SILELNETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAV LEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQV FKNRGTDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVY DVDKDEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMV QVVKEGLGTKGPTLSPFPCLRSRFWVPYGVHFKYSYFVREEMSSSSDIIWRPGPVYSLSIPSDG QKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFDGGNNQNIVKDHSVRDTRNQGLSV GDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYISQYGRPQVVEEPWILESIVSAKKP VAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQSILELNETIVLADGKVEARDIIR KLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSI YLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRGTDHVGDYCNEENLPAYEN DDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDKDEENDHMEDEYSEGILQGY QSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVVKEGLGTKGPTLSPFPCLRSR FWVPYGVHFKYSYFVREEMSSSSDIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTP TWGSWLMEADSLEGELFDGGNNQNIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQ STIMHNCVTEIPNASYISQYGRPQVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGV SKNMHEQYQPVEEPWLFQSILELNETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPS SRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISR PSLMSIKQNRDPFVYPQVFKNRGTDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVE NVTDNNVDDDEVDSISVYDVDKDEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESND DTNGSRWSQVRKGTKVMVQVVKEGLGTKGPTLSPFPCLRSRFWVPYGVHFKYSYFVREEMSSSS DIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFDGGNNQ NIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYISQYGRP QVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQSILEL NETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGK LVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRG TDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDKD EENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVVKE GLGTKGPTLSPFPCLRSRFW(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |