Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d031873_circ_g.3 |
| ID in PlantcircBase | zma_circ_006737 |
| Alias | Zm01circ00126, zma_circ_0000366 |
| Organism | Zea mays |
| Position | chr1: 204969766-204971339 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | e-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d031873 |
| Parent gene annotation |
Ribonuclease E/G-like protein chloroplastic |
| Parent gene strand | - |
| Alternative splicing | Zm00001d031873_circ_g.4 |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d031873_T001:2 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.207752731 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
204971323-204969909(+) 204971293-204969768(-) |
| Potential amino acid sequence |
MHSIWYPKSASQAWKWTKCWTFRTQSFFDNLNHYFCALANLRPSASICVIIRFS*(+) MSSSSDIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFD GGNNQNIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYIS QYGRPQVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQ SILELNETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAV LEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQV FKNRGTDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVY DVDKDEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMV QVVKEGLGTKGPTLSPFPCLRSRFWVPYGVHFKYSYFVREEMSSSSDIIWRPGPVYSLSIPSDG QKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFDGGNNQNIVKDHSVRDTRNQGLSV GDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYISQYGRPQVVEEPWILESIVSAKKP VAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQSILELNETIVLADGKVEARDIIR KLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSI YLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRGTDHVGDYCNEENLPAYEN DDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDKDEENDHMEDEYSEGILQGY QSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVVKEGLGTKGPTLSPFPCLRSR FWVPYGVHFKYSYFVREEMSSSSDIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTP TWGSWLMEADSLEGELFDGGNNQNIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQ STIMHNCVTEIPNASYISQYGRPQVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGV SKNMHEQYQPVEEPWLFQSILELNETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPS SRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISR PSLMSIKQNRDPFVYPQVFKNRGTDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVE NVTDNNVDDDEVDSISVYDVDKDEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESND DTNGSRWSQVRKGTKVMVQVVKEGLGTKGPTLSPFPCLRSRFWVPYGVHFKYSYFVREEMSSSS DIIWRPGPVYSLSIPSDGQKKQVIIVKDLWMKTSLPGLPTPTWGSWLMEADSLEGELFDGGNNQ NIVKDHSVRDTRNQGLSVGDHIILKLGNGTPLHAKLLSDNQSTIMHNCVTEIPNASYISQYGRP QVVEEPWILESIVSAKKPVAKVKDKKGQKKLVNYKHTLSGVSKNMHEQYQPVEEPWLFQSILEL NETIVLADGKVEARDIIRKLRKIEKPLTPLDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGK LVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRG TDHVGDYCNEENLPAYENDDDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDKD EENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVVKE GLGTKGPTLSPFPCLRSRFW(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b |