Detail information of POPTR_0003s01840_circ_igg.1


General Information
CircRNA Name POPTR_0003s01840_circ_igg.1
ID in PlantcircBase pop_circ_000897
Alias Chr03:2841453-2845929
Organism Populus trichocarpa
Position chr3: 1706658-1711134  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   igg-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0003s01840_circ_ig.1
Support reads 3
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGGAAAGGAAATTGACCTTATTTAAATCCCTAGATTCCCTCTTTGTAATGGCCATGTACAGC
TCAACTTTTCCTATATAATGAAAGCCTAGTCGAAAGggtgaaggcaattcaaaccattctgtta
tggtatcagagcttggtgctttctcacagaattcttaagattttttgttttctttcttagtcat
agctttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAAGGCAATTCAAACCATTCTGTTATGGTATCAGAGCTTGGTGCTTTCTCACAGAATTCTT
AAGATTTTTTGTTTTCTTTCTTAGTCATAGCTTTATGGAGAAGTCAGATAATGTTTGTGTCAGA
TTTACTGGCAAAAATTATGCTGCCTGGACATTCCAGTTAGAGATCTTTCTCAAGGGAAAGGAGT
TATGGGGCCATATAGATGGCAGTGACAAAGACTTGGTTGCTGAAGGATCTGTGGTTGCTAAGGC
AGCATGGGCTGCCAAAGATGCACAAATCATGTCCTGGATTCTCAGTTCTATGGAGCCACATCTG
ATCCTTTCTTTGCGTCCTTATAGATCTGCAAAGGCTATGTGGGATCATCTCACTCAAGTTTATA
ACCAAGACAACAATGCTAGGCGTTTTCAGCTTGAGTTGGCTATTGCCAACTATACCCAAGGAGA
TCTTTCTATTCAAGATTACTATTCTGGTTTTCTGGCCTTATGGAGTGATTATTCTGATCTTGTT
ACAGCCAAGGTTTCTGCAGAAGGTGTGCTGGCAGTGCAGCAAGTCCATAAAATCAGCCAACGCG
ACCAATTTCTGATGAAATTGCGACCAGAATATGAACCCGTTCGTGCCTCTCTCGTCAATCGCGA
TCCTGTTCCATCCTTGGATGCTTGCTTTGGCGAACTATTGCGTGAAGAGCAGCGTCTCCATACT
CAAACCATTATGGAGCAAGCAAGAGTTGCCTCTACCAGTGTCTCAGTTGCTTATGCTGCTTCTG
CTTACAGCAAGGGGAAGAGTCGCGATATGAGCAAGACTCAATGCTATAGTTGTAAGAAGTACGG
ACATATTGCTTCCCATTGTCCTCATAAAATTTGTAACTACTGCAAGCAGCTAGGCCACATCATT
AAGGAGTGTCCTATCCGTCCTCCACGCCCCAACAAAGCTTATCACGCTGCTGTTACTGCTGCTG
GTTCCCCTTTTTCACAGACTCAACCTCCAGCAAATTTACTCACCCGAGAGATGGTGCAAGAAAT
GATTGTGAGTGCTTTCTCCACACTTGGACTTCAAGGTACTGGTTCTTCAGCCCATACTTGGATC
TTAGACTCAGGTGCTTCCAATCATATGAAAAACTCTTTGCATGGGTTAAGTAATATCCGCAAAT
ATTGTGGATCCTCACATATTCAAACAGCCAATGGTAGTACTCTTCCCATCATAGCTGTTGGTGA
TGTACCTCCCTTTTTAAAGGATGTTTTTGTCTCACCCAAGCTTGCTATAAACTTAGCTTCTGTA
GGTCAACTTGTGGACAATAATTGTGATGTAAACTTCTCTAATCGTGGCTGTATTGTACAGGATC
AGATGTCAGGACAGCTGATAGCGAAGGGGCCTAAGCATGGACGTTTATTTTCTCTCCAACTTCC
TATTCCACGCACTTTGCTTCCTTCCTCTGTTCTAGCTTTCTTTTGTACTGCACCTAAAGTGTTC
AATGAAGTTTGGCATAAACGTCTAGGTCATCCAAATCCTAGAATCCTCTCTCATTTGTTGAAAT
CTGGGTTAATAAGTAATAAAGAACATTCAGCTTCAACTGTGTTCCTTGATTGTGCTACATGTAA
ACTTGGCAAAAGTAAAATTTTACCTTTTCCTTCTGCAGGCAGTAGAGCCACAAACCCTTTTGAG
ATAATTCATAGTGATGTCTGGGGGATTAGTCCTGTCATTTCTCATGCAAATTACAGATATTTTG
TCACTTTTATTGATGACTACAGCCGCTATACATGGGTTTATTTCTTGCGAAACAAATCAGAAGT
TTTCTCTATGTTCAAACTATTCTTGGCATTGGTTAACACTCAATTTTCTGCCACTGTTAAGACA
CTTAGATCAGATTCGGGAGGGGAATATATGTCTCATGCTTTCCAATCATTCTTGCAATCTAATG
GTATCGTTTCTCAACGATCATGTTCCTATACTCCTCAACAAAATGGAGTAGCAGAACGCAAGAA
TCGCCATCTTTTGGATATGGTTCGTACCTTGCTCATTGAATCTTTTGTTCCTCCAAAGTTTTGG
GTAGAAGCACTCATTACAACAACTTATCTCATCAATAGACTTCCTTCACAAGTCTTAGGTCTAG
AGTCTCCATATTTTCGGCTTCATCATTGCCATCCTATATACACCAATCTTCACACCTTTGGGTG
TGTATGCTTCATGCATCTTCCTCCACCTCATAGAAATAAACTTTCTGCTCAGTCCATTAGGTGT
GCCTTTCTTGGATATAGTATTACTCAAAAGGGTTATCTATGTTTTGATCCACACACTAATCGAG
TTCATGTTTCTAGAAATGTTATTTTCTTTGAAAATCAATGTTTCTTTCCTTTGTCTTCCTCCTC
AGCCACTTCTCTTGCCTCTTTACCCTTTTTTGATGACTCTTCTCCTTTGCAAAGTGTTCCAGTT
GACCGGTTCCAGCCCCATTTGGTGTACAAAAGAAGACTTCCTATGCTGCCCCCTTCAGCTTCTG
TCTTGTCATCTGCTCCTCCTTTGCAGCCTTCTATGGCTTCTGAGGTACCTGTTTTGGCTCCTTT
ACGCCGCTCCTCTAGAATATCTGTACCACCTGCTAAGTATGGATTTACCTCATCTGTGGCACAT
CATTCTACTGCTGCTCTCTCTGTCACTTTATCCTCTATTTCTATCCCTACTGGCTATTCACAGG
CAGCTAAAGAACCATGCTGGCAGCAGGCTATGCAGGAAGAGTTACATGCTCTAGAAGCTAATCA
GACTTGGGATATTGTTGATTGTCCTTCTGGTGTGACTCCTCTTGGATGTCGATGGGTTTATTCT
GTTAAAATCAAGGCTGATGGCAGCTTGGACAGATATAAAGCACGATTGGTGGCTCTTGGAAACC
ATCAAAAATATGGAGAACATTATGAGGAGACCTTTGCTCCAGTGGCTAAAATGGGTACTATTCG
TACAATTTTGGCCATCGCAGCTTCAAAACATTGGTGTTTGCACCAATTGGATGTGAAGAATGCC
TTTCTTCATGGTGATCTCACTGAAGATATATATATGCGCCCACCAGCTGGCTTATTTTCCACTC
CTACCTCTGCTGTGTGTAAGTTACGCCGCTCCTTGTATGGTCTCAAACAGGCTCCTCGTGCTTG
GTATGAGAGATTTACTTCTGTCCTTCTTCAATTTGATTTCCTCAAAAGTAAATATGATGCCTCT
TTGTTTCTACGTAAGACTGCAAATGGAGTTGTGTTTCTATTGGTGTATGTTGATGATATAGTCA
TAACCGGTACTGATTTAGCTCTGATTGATCAACTCAAGCAGCATCTGCAGAAATCCTTTCACAT
GAAGGATCTAGGTCCTCTAACATATTTTCTTGGTCTAGAGATTCATGCTGGTTCCCATGGCATT
TTTTTATCCCAACACAAGTATGCCATGGACTTGGTGGCAGCTGCTGGTCTCCAGCATTTGCCAC
CCCTTGATACTCCAATGGAAATTAATCTCAAGCTCCGCAAAGATGAGGGTGATTTATTATCAGA
CCCAGCTGCATATCGTACACTCGTGGGCAGCTTACTCTATCTTACACACACTAGACCTGATATT
TCTTTTGCTGTACAGCAGGTTAGTCAGTTTATGGCTTCTCCCAGGCACCTCCATATGGCTGCTG
TTCGCCGCATCCTTCGTTATATTCATGGCACCATTCGAAGTGGCCTTTGCTATCCTGCTGGTAC
TTCCCTTGATCTTATTGCTTATAGTGATGCTGATTATGCCGGGTGTTCCGACACTCGCCGTTCC
ATTACTGGTTGGTGTATGTTCCTTGGCCCTGCACTTATTTCCTGGAAGAGCAAGAAACAAGATC
GTGTTTCCAAGTCTTCTACTGAGTCTGAATACCGGGCTATGTCCCAAGCTTGTTCCGAAATCAT
CTGGCTCCACGGGCTCCTTGCTGAGCTGGGTTTTCAGCAGTGCACTCCTACTCCTCTTTTTGCT
GATAATACCAGTGCTATTCATCTTACTGCCAATCCTATCTTCCATGAGCGCACAAAGCATATTG
AGATGGATTGCCACTTCATTCGTGACGCATTTGCGGCTCAGACTATATCACTTCCACATGTGTC
CAGCAATCTTCAGGTGGCTGATGTTTTTACCAAGACTCTCACCCGACAACGTCATCATTTTCTT
ACTACCAAATTGATGCTTATGGACCAGCCCGCATCAATTTGAGGGGGGATGTCAATAGAAAGAC
TTAAGTCAAAGCATACAGCTATTACAGCTGTATGCTTGAATAGGAAATAGGAAAGTCACAAGCA
TACAGCTATTGCAGCTGTATGCTTGAATAGGAAATAGGAAAGTCACAGCTGTTACAACTGTATG
CTGGAATAAGAATATAAATGATTGAATAGGAAAGGAAATTGACCTTATTTAAATCCCTAGATTC
CCTCTTTGTAATGGCCATGTACAGCTCAACTTTTCCTATATAATGAAAGCCTAGTCGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.102781723
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020