Detail information of BGIOSGA011986_circ_g.1


General Information
CircRNA Name BGIOSGA011986_circ_g.1
ID in PlantcircBase osi_circ_013954
Alias Chr03:4207314_4207564(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4684605-4684855  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011986
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA011986-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCCCCATCAACCATGCATATGCTGAGGTCTCAGAGAGTACTCACTGAGCTGCAAACAACTGA
AGCAGACTCCTTAGAAGATTCAGCGACACCATCAAGggttttcgtaaggacaagaaaggagcta
aggaagttaaaagaccacggccagaaacaagaatagggtgtcctgcacgaatgtcaattaagat
tacatctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTTCGTAAGGACAAGAAAGGAGCTAAGGAAGTTAAAAGACCACGGCCAGAAACAAGAATAG
GGTGTCCTGCACGAATGTCAATTAAGATTACATCTGATGGTAAATATCGTATATCTGAATTCGT
ACCAGATCATAACCATCAGCCAGCACCCCCATCAACCATGCATATGCTGAGGTCTCAGAGAGTA
CTCACTGAGCTGCAAACAACTGAAGCAGACTCCTTAGAAGATTCAGCGACACCATCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021