Plant Circular RNA Database

Detail information of AT4G32250_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT4G32250_circ_g.1
					
						ID in PlantcircBase
						ath_circ_034004
					
						Alias
						4:15570326-15572538
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 15570326-15572538  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT4G32250						
					
						Parent gene annotation
						
							AT4g32250/F10M6_110
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT4G32250_circ_g.2 AT4G32250_circ_g.3 						
					
						Support reads
						1/1
					
						Tissues
						root;flower
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G32250.2:4
AT4G32250.1:4
AT4G32250.3:4

General Information
CircRNA Name	AT4G32250_circ_g.1
ID in PlantcircBase	ath_circ_034004
Alias	4:15570326-15572538
Organism	Arabidpsis thaliana
Position	chr4: 15570326-15572538 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT4G32250
Parent gene annotation	AT4g32250/F10M6_110
Parent gene strand	-
Alternative splicing	AT4G32250_circ_g.2 AT4G32250_circ_g.3
Support reads	1/1
Tissues	root;flower
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G32250.2:4 AT4G32250.1:4 AT4G32250.3:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTCCCCGCTGCTAAAGCGCTCTCAGACTCACCTTCAATGATTTCATACTCGGTATCATCCGGC
TTGCCAGCAATAATCTTTGAAGCCATTTATCTCTGTcatccggaatcttacagtcaccttgtcc
agtcgagccatcgcgttgtttcccatcctttgaccttcctattttcttcctgacacagatccct
aacttcat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATCCGGAATCTTACAGTCACCTTGTCCAGTCGAGCCATCGCGTTGTTTCCCATCCTTTGACCT
TCCTATTTTCTTCCTGACACAGATCCCTAACTTCATCGCTGTCAATAGACCCATAGCAATAAGC
AAAGGTCTCACAGCCCAATGAAAATCCTCCAGATGTTGATATTTTTCCACAGCTCCTTGACATG
TATTGAAATTCACAATCTCTACTTCAGCCGGATCTGCAAGATAGCTTCCATGTTCCTCTCCAAA
AGGTAACATTCCAGGGAAGTCCACTTCAAGGCAACCGTTTGGTAGAACCTGAGAGATCCTGCCA
GTTGCCCAAATACCTCTACCTTTACGCATCCATTTGAATCTCGGGATGACAACATTGGCTTTGA
GTTTCACAAATTGACCCACACTGTATACTTTAGCCATCTGAAGCTGCGATGATGTCCCTTTCCA
GAGAGTTGGCAACCCAATAAATCCAACAGCTACATTTCCCTCACGGTCAATTGAATGGAGAACA
CCAACCGGAGAGTGCCTCTTGTCTTTCCTGACCTTCAGACGCACCCAATCTCCAGAAGCTAAGC
CGTTAGTTACCCGTTCAAGAACAGATACGTGAACCCTTAATGGATCATGTACACCATGGACTTT
AACTAGCACAAATCCATCTGGGTCTGTGGAGTCACGTTCTAAACCAACCACCATTCCTTCTGGC
ACATCCATGTTCTCATGCTTACACGAATTGGCAGGCTTTCTTGAACGCACGGTGTCGCGCACTT
GCAGATGATCCTTTGAAAGAAACCATTCTGTATAACCAAGAGTAGCCGAGCTCTTCCTGATTTC
TCTACTATCAATGCCTCTCCTGACCTGTTCCTCCTCCGAGTTCTGCAAGCTGCCAAATCGGTTC
CAGTCAATATCACAATTAAAGGTAGCCAATTAAAATTTCCATCAAGAATAAAGAAATTGGATTC
CAAAAAAATATTAAAACATCAGACACGAAACTATAAAAACTATGGGATTTTCCGAAGATACTAT
GACCATACATAATGAAATATAAACACTTCTAAATCGATCTTGTTCAAACTGAATATATAACGGT
GTCAAGATATGATTTACCTCTTTAAGACGAGTAAGATGTCAGTCATCGAAGGTCGGCTTCGAAG
ATCATACATAAAGCAACCCCGAAGTAGGTTCTCGAGAGGAGGCGGTATGCTACTGGGGATACTA
AGCTTTTCTTGCTTTCTCACCACCAAATCATATATTTCATCGGCAGATCTCCCAGACCAAGGTT
GTACACCAGTCAGCATTTCAACAATGCTGCAACCAAATCCCCAAGAATCAGTCTCAAAGGACAT
GGGACCTCTGACATCCGGTTGCCACTGTTCTGGTGCCATATAGTTTGGAGTTCCAAGTCTCTCT
GTCATATCAGAACTTGGTAAAGGGATACTAAGAAGGAGATAAGGGATCCCAACATCCCCGAGGA
TGGCCTTGTCGTTATCACTGAGAAGAAAGTTAGAGGGCTTGAGATTGAGAATGAGAAACCCTTT
TGAGTGCAACTCCAGGATCCCTGTAGCCAGATCAACCCCGTATCTGTAAAACGAGGTTCACATA
AATAAGAAAGACATTAGTATTCTATATTACAATGAAGAAGACGCTACTACAATGAGCTTCTTAC
TTGTGTAATGAAGAATTACCTCAAAACATCTGGCAGTGAAAGCTTTCCTCCTTTAAGCCGAGCC
ATCTTGTCACCAAGAGAGCCCTCGTAGAATTTCATGACGACACATATCTACACGATACAAATCA
GCTATTAAACAAAAATTGAAAATACGGTGAAACTAGAGAAACACACATGTTTGTTTCACTTACC
TTTCCATTGATACTAGAGACTCCCCTGAGCAGACAGACATTCTCTAGTCCTTGACATTTAGAGA
AGAGATCTTCAAACTTATCTACCACAACCCTTCTTTGATCTTCCTTGATGGGATAAAGCATTTT
GATGGCCACTTCATGATGCTCATCATAGTCCTCAGTTGACTGATGATGAGTAGCCAGCCAAACA
TCACCGAAGGGACCTCTTCCAATTCGATGTCGAAGCTTCAACGTTGATGAATTCATCCAAGGGC
TTGTCCCCGCTGCTAAAGCGCTCTCAGACTCACCTTCAATGATTTCATACTCGGTATCATCCGG
CTTGCCAGCAATAATCTTTGAAGCCATTTATCTCTGT
						
					

			
		

Sequences
Splice junction sequence	TGTCCCCGCTGCTAAAGCGCTCTCAGACTCACCTTCAATGATTTCATACTCGGTATCATCCGGC TTGCCAGCAATAATCTTTGAAGCCATTTATCTCTGTcatccggaatcttacagtcaccttgtcc agtcgagccatcgcgttgtttcccatcctttgaccttcctattttcttcctgacacagatccct aacttcat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATCCGGAATCTTACAGTCACCTTGTCCAGTCGAGCCATCGCGTTGTTTCCCATCCTTTGACCT TCCTATTTTCTTCCTGACACAGATCCCTAACTTCATCGCTGTCAATAGACCCATAGCAATAAGC AAAGGTCTCACAGCCCAATGAAAATCCTCCAGATGTTGATATTTTTCCACAGCTCCTTGACATG TATTGAAATTCACAATCTCTACTTCAGCCGGATCTGCAAGATAGCTTCCATGTTCCTCTCCAAA AGGTAACATTCCAGGGAAGTCCACTTCAAGGCAACCGTTTGGTAGAACCTGAGAGATCCTGCCA GTTGCCCAAATACCTCTACCTTTACGCATCCATTTGAATCTCGGGATGACAACATTGGCTTTGA GTTTCACAAATTGACCCACACTGTATACTTTAGCCATCTGAAGCTGCGATGATGTCCCTTTCCA GAGAGTTGGCAACCCAATAAATCCAACAGCTACATTTCCCTCACGGTCAATTGAATGGAGAACA CCAACCGGAGAGTGCCTCTTGTCTTTCCTGACCTTCAGACGCACCCAATCTCCAGAAGCTAAGC CGTTAGTTACCCGTTCAAGAACAGATACGTGAACCCTTAATGGATCATGTACACCATGGACTTT AACTAGCACAAATCCATCTGGGTCTGTGGAGTCACGTTCTAAACCAACCACCATTCCTTCTGGC ACATCCATGTTCTCATGCTTACACGAATTGGCAGGCTTTCTTGAACGCACGGTGTCGCGCACTT GCAGATGATCCTTTGAAAGAAACCATTCTGTATAACCAAGAGTAGCCGAGCTCTTCCTGATTTC TCTACTATCAATGCCTCTCCTGACCTGTTCCTCCTCCGAGTTCTGCAAGCTGCCAAATCGGTTC CAGTCAATATCACAATTAAAGGTAGCCAATTAAAATTTCCATCAAGAATAAAGAAATTGGATTC CAAAAAAATATTAAAACATCAGACACGAAACTATAAAAACTATGGGATTTTCCGAAGATACTAT GACCATACATAATGAAATATAAACACTTCTAAATCGATCTTGTTCAAACTGAATATATAACGGT GTCAAGATATGATTTACCTCTTTAAGACGAGTAAGATGTCAGTCATCGAAGGTCGGCTTCGAAG ATCATACATAAAGCAACCCCGAAGTAGGTTCTCGAGAGGAGGCGGTATGCTACTGGGGATACTA AGCTTTTCTTGCTTTCTCACCACCAAATCATATATTTCATCGGCAGATCTCCCAGACCAAGGTT GTACACCAGTCAGCATTTCAACAATGCTGCAACCAAATCCCCAAGAATCAGTCTCAAAGGACAT GGGACCTCTGACATCCGGTTGCCACTGTTCTGGTGCCATATAGTTTGGAGTTCCAAGTCTCTCT GTCATATCAGAACTTGGTAAAGGGATACTAAGAAGGAGATAAGGGATCCCAACATCCCCGAGGA TGGCCTTGTCGTTATCACTGAGAAGAAAGTTAGAGGGCTTGAGATTGAGAATGAGAAACCCTTT TGAGTGCAACTCCAGGATCCCTGTAGCCAGATCAACCCCGTATCTGTAAAACGAGGTTCACATA AATAAGAAAGACATTAGTATTCTATATTACAATGAAGAAGACGCTACTACAATGAGCTTCTTAC TTGTGTAATGAAGAATTACCTCAAAACATCTGGCAGTGAAAGCTTTCCTCCTTTAAGCCGAGCC ATCTTGTCACCAAGAGAGCCCTCGTAGAATTTCATGACGACACATATCTACACGATACAAATCA GCTATTAAACAAAAATTGAAAATACGGTGAAACTAGAGAAACACACATGTTTGTTTCACTTACC TTTCCATTGATACTAGAGACTCCCCTGAGCAGACAGACATTCTCTAGTCCTTGACATTTAGAGA AGAGATCTTCAAACTTATCTACCACAACCCTTCTTTGATCTTCCTTGATGGGATAAAGCATTTT GATGGCCACTTCATGATGCTCATCATAGTCCTCAGTTGACTGATGATGAGTAGCCAGCCAAACA TCACCGAAGGGACCTCTTCCAATTCGATGTCGAAGCTTCAACGTTGATGAATTCATCCAAGGGC TTGTCCCCGCTGCTAAAGCGCTCTCAGACTCACCTTCAATGATTTCATACTCGGTATCATCCGG CTTGCCAGCAATAATCTTTGAAGCCATTTATCTCTGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.201557923

Conservation Information
Conserved circRNAs	NA
PMCS	0.201557923

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT4G32250_circ_g.1

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