Detail information of BGIOSGA009846_circ_g.2


General Information
CircRNA Name BGIOSGA009846_circ_g.2
ID in PlantcircBase osi_circ_013607
Alias Chr03:33216206_33217436(MH63RS2), Chr03:33028495_33029725(ZS97RS2), Chr03:33216206_33217436(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 34430064-34431294  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA009846
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009846_circ_g.1 BGIOSGA009846_circ_g.3 BGIOSGA009846_circ_g.4 BGIOSGA009846_circ_g.5 BGIOSGA009846_circ_g.6 BGIOSGA009846_circ_g.7 BGIOSGA009846_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA009846-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATCATAACTTCAACAACACTGGAAATTCCTGCCAACTGCACAGCAAACTTCTGCAGTTGGG
ATAACTTAGACATCATCATCTCTAATCCAGATCTATcaatcgcttgctttgcaatcaccatatc
agatgatccatgcaggaagagtacatcaactgcctctcgcaagtccttaaatgggtatttatca
acactgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATCGCTTGCTTTGCAATCACCATATCAGATGATCCATGCAGGAAGAGTACATCAACTGCCTC
TCGCAAGTCCTTAAATGGGTATTTATCAACACTGAACTGATCAATTGTGGAACAGAACATAGAT
GATGACTGTTCACTCTGCAAACAGACAATTTCCACTCCTTCCTCGCTACCACTATTGCTTTCTT
GAATCCCAAGGTTCTGTAGTGCCTGCTCAATGAAAAGTATCCCCTGGTTGGCTTCATTGTACGC
AGATGATTTATCAGAGAATTCAGGCCATTTCCGTTCTTTTGCATCTGCCTTTCTTTTAATCACA
TCAGAACTCCAAGATGCTAAGTTAGTGTGCCTTGAGGGTATGTCCTCAAGAAATTTATGCCTGA
TGCACCACATCATGGCCTCCAAATGCTGTAAAAAAAAGCTCCAAAATGGACACTTCATTCAGAC
ATAATGACAGTAAGAAACATCTGGCTACTTCTCTTTTCATGCATTCAGTGATAAACATATGGTA
GGGATATACATAAAAAATATATACGAAGCATTTCAACATTGATTTTCTCATTTTCTTGAGAAAT
TGTCCCATGTCCTAGTCCCTAGACCTAGTATAGCATCGCGATGGAAGAGAAAAGCAGTGCACAG
ACATCTTATCACCTACTGGAGAGATATATTCAGTTTCGGAGAAGTAGTGCACAGACATTTAACT
AAAATAACGATGTTTCTTCCACCTTTGACACTGGGAGCTATAGTTTTACCACTAGAAACTAATC
AAACAGAACTAAATCATATATGATACTTCTCCATCGTTTTGTTCAGTAAATACTGAACCACCCA
GAGCGATTAGTAGTGCTCCACCACCATGACTGTGAATATTCCAATATGAACTCTTAAGTGACCT
AAGTAGCTCTAGCTTCTTGGCAAAACAACACTAGTAGAACCATTCCATGAAATATCATAATGCA
TGGGCACCCATTGTGCTGCCTAGAGTAGTTTATTCTATTAGCTTGATCATTGTGGCAGTGAAAA
ATTTATAGCAGAAGTGGAGTTAAGACAAAACCTGTTTCGCCTTCAGCGTGCCTTCCATAAGTTG
ATGAAGGTCATTAACATGAGCTGAAACTGCTTCACTAAAAGATGTGATCATAACTTCAACAACA
CTGGAAATTCCTGCCAACTGCACAGCAAACTTCTGCAGTTGGGATAACTTAGACATCATCATCT
CTAATCCAGATCTAT
Conservation Information
Conserved circRNAs osa_circ_021744
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021