Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10240_circ_g.1 |
ID in PlantcircBase | ath_circ_001840 |
Alias | At_ciR1740 |
Organism | Arabidpsis thaliana |
Position | chr1: 3357651-3358094 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G10240 |
Parent gene annotation |
Protein FAR1-RELATED SEQUENCE 11 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 5 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G10240.1:1 AT1G10240.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.476626308 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3358080-3357653(-) |
Potential amino acid sequence |
MNGKAPQTILTDHNMCLKEAIAGEMPATKHALCIWMVVGKFPSWFNAGLGERYNDWKAEFYRLY HLESVEEFELGWRDMVNSFGLHTNRHINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQ RFLSAQTRLAHFVEQAFTGFMNGKAPQTILTDHNMCLKEAIAGEMPATKHALCIWMVVGKFPSW FNAGLGERYNDWKAEFYRLYHLESVEEFELGWRDMVNSFGLHTNRHINNLYASRSLWSLPYLRS HFLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQAFTGFMNGKAPQTILTDHNMCLKEAIAGE MPATKHALCIWMVVGKFPSWFNAGLGERYNDWKAEFYRLYHLESVEEFELGWRDMVNSFGLHTN RHINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQAFTGFMNGK APQTILTDHNMCLKEAIAGEMPATKHALCIWMVVGKFPSWFNAGLGERYNDWKAEFYRLYHLES VEEFELGWRDMVNSFGLHTNRHINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQRFLS AQTRLAHFVEQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |