Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09730_circ_g.7 |
ID in PlantcircBase | ath_circ_001734 |
Alias | At_ciR787 |
Organism | Arabidpsis thaliana |
Position | chr1: 3153144-3153754 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | AT1G09730 |
Parent gene annotation |
Cysteine proteinases superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G09730_circ_g.3 AT1G09730_circ_g.4 AT1G09730_circ_g.5 AT1G09730_circ_g.6 |
Support reads | 9/9 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09730.2:2 AT1G09730.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.272535057 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3153723-3153146(-) |
Potential amino acid sequence |
MEGPSCAEPATAVESDDHQCEDDSTLVTEAKESRTILTFGLETTDHLEETDAEHVNQGLMLGLK TEDLAKETDIDHDNHGLMFGLNSEDDIEETDVDHRVESFSCQLGGNSFYAETSSYSQRQLNSPF SDSSSSEEQIDMMSAIDESLSDRSALSEASDSEDDEEVCNEKRVEEEEMEGPSCAEPATAVESD DHQCEDDSTLVTEAKESRTILTFGLETTDHLEETDAEHVNQGLMLGLKTEDLAKETDIDHDNHG LMFGLNSEDDIEETDVDHRVESFSCQLGGNSFYAETSSYSQRQLNSPFSDSSSSEEQIDMMSAI DESLSDRSALSEASDSEDDEEVCNEKRVEEEEMEGPSCAEPATAVESDDHQCEDDSTLVTEAKE SRTILTFGLETTDHLEETDAEHVNQGLMLGLKTEDLAKETDIDHDNHGLMFGLNSEDDIEETDV DHRVESFSCQLGGNSFYAETSSYSQRQLNSPFSDSSSSEEQIDMMSAIDESLSDRSALSEASDS EDDEEVCNEKRVEEEEMEGPSCAEPATAVESDDHQCEDDSTLVTEAKESRTILTFGLETTDHLE ETDAEHVNQGLMLGLKTEDLAKETDIDHDNHGLMFGLNSEDDIEETDVDHRVESFSCQLGGNSF YAETSSYSQRQLNSPFSDSSSSEEQIDMMSAIDESLSDRSALSEASDSEDDEE(-) |
Sponge-miRNAs | ath-miR414 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |