Detail information of BGIOSGA013872_circ_igg.1


General Information
CircRNA Name BGIOSGA013872_circ_igg.1
ID in PlantcircBase osi_circ_013845
Alias Chr03:37920510_37922559(MH63RS2), Chr03:37920510_37922559(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 39300126-39302173  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCATTGCATCTACTGATTATGATAGGGAGTCCGTCCAATCCTATAAGGATGGAAAAGGCAGT
TTCACCCAGACAGATCTTGCATCAAAGAGTGGTCAGggtttaggggagtaaagggaaatggatg
tggagaagcctacttcaaagggacatggcttctttagcctgtttgattggggcaagaagtccaa
gaagcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTAGGGGAGTAAAGGGAAATGGATGTGGAGAAGCCTACTTCAAAGGGACATGGCTTCTTTA
GCCTGTTTGATTGGGGCAAGAAGTCCAAGAAGCGGCTGGTCAGTGGAAATGGGAGCGATTCTCC
GGCTCCAAGTAAGTCAATGTGGCACAGGAGTCCAGTCATTGCTATAAACTCGATACATCCTTTT
TTTCTCAAATGGATGGAGGAATTAGGATTGCATACTGATACTTCCTTTGCAGGGGTTTCTGAAA
ATTTCAGGGAATCTGATGGTGGCACACCAAGCACTCGACCAAATTCGGTGCGTGTTCATGCGAG
CAATCTTATTAGTTTTTTAGTTTTTTTTGTGTTATTTATGTGTAATTGTGTATGCATAATTGTT
GGCAGTTCCTTGAAGATGCACCGAGTTTGAAGGAAAGCAGTGAGCACAGTTGCTCATCTTCAGT
GGTTGACGATGAAGCTCTTGTGAGGAGGGGCCCCACTGTTGTAGCAAGGCTTATGGGTCTGGAT
TCCATGCCCGCAGCAAGCTCATCTGGATCCTATACGATGCCATTAACTGTGCAGCAGTCCCCCC
AGAACAGTACTATCCATGATGAGTTCATTGGCAGAAGCTATGTTGGCAGTCCTCATAAGATGCC
CGGTAGTCCTCATAAGATGCCTGGTAGTCCTATTGACCGGTTTAGGATGGAAGCATTGCCACCA
AGATTTGCCAAAAGGACACTGTCGGTTGCGCAAAACAAGTTGTCCCCCATGAAGAATCCTAATC
ATATATCTAGCAGAAATGCTGCTGATATAATGGAGGCGGCGTCTAGGATTATAGGGGCTGGAGT
TGAGGTTATTAGCCCTTACAGAGTTCGTGATGTTGGATATGCAAATACTGTTCGTGTATACAGC
CAAAGAGAGATTGCGATAGTCCAACAAAGGCCACCAAGAATGAATGAAGCACTGAAGAAGCATG
ATGGCTTGACATCTTATAGGCTACCAACTGGAAAGCCTTTGGATGGAAGTCTGAAAAGTTCAGG
GAACACCTCTGCTTCTGTGGTCTCACAGTCAAATGGAGGTGCTCCAGTTGGCCCAAAGGTCAAG
GCCAGCAGTCGATCATCACCAGATTCTAGAGCAACTAATGTTCAAGGAAGGGAAGATATAAGCA
AGATTAGCAGAAAACTTGCAACTCGGGATCCTGAGCGGAGAATGGTTGAGAGAAATGGGATTAA
CCAAGGGAAGAATAACAATCAAGTGGGCATGGCAAGTTCGTCCAATGTGCTTGTGCAAAATAAC
AGAAAGCAAAATGCTATGGTTAAGCACAAGGTGAATTCCAAGCCACCAACACCCAACCGGCAAA
GAAGCAACACACATTCAATAAATGGCACTATGAGAAAGGTTGGGACTGCCGGCACACCGTCTGA
AAACAATACTCAAGGTAACAGAAACGTGGAATTGCGGTCAACTGGCCATGCAAATAGAAGGCAA
AATTCTACAGCCAAATCAATCCCCAAGCCAGGAAGATTACCAGATGGGAGGATACATTCAGTGA
AAACCCGTCCAAGTGATAAAGATATTGCTGACAGAAGCCAAAGGCGTGTTCGGCACAATATTGT
AATAGATGAGCAATCACCTTTTTCCATGAACAAGAAGAAAATTAGCACTGATATTGTTTCATTC
ACATTCACCGCACCAGTTGATAAACCATTATCTGGTTATCGCCTACCCAATCATTTAGTGGAAA
AACAGTTTATGAAAAACGCGAGCTCAGTACCAAATTCAAGCGAGACATCGAGTGCTAAATTTGA
TTCAATTGATGGTGATTATTTGGGTCTCCTTTTAGAGCAGAAGTTGAGAGAACTTACTTCTGGG
GTTAGGTCACCCTACTGTAAGCCAGCCAAAGATGTTCGGATATATGCCCCATCATCAGTTCTGG
AAGATTCACAATCAGCATGTGAAACATCGAGCATTGCATCTACTGATTATGATAGGGAGTCCGT
CCAATCCTATAAGGATGGAAAAGGCAGTTTCACCCAGACAGATCTTGCATCAAAGAGTGGTCAG
Conservation Information
Conserved circRNAs osa_circ_022569
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1425-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021