Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05170_circ_g.5 |
ID in PlantcircBase | ath_circ_000776 |
Alias | At_ciR2089 |
Organism | Arabidpsis thaliana |
Position | chr1: 1492336-1493240 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI-full |
Parent gene | AT1G05170 |
Parent gene annotation |
Hexosyltransferase (Fragment) |
Parent gene strand | - |
Alternative splicing | AT1G05170_circ_g.1 AT1G05170_circ_g.2 AT1G05170_circ_g.3 AT1G05170_circ_g.4 AT1G05170_circ_g.6 AT1G05170_circ_g.7 |
Support reads | 4 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G05170.1:5 AT1G05170.2:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.280295746 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1493210-1492338(-) |
Potential amino acid sequence |
MELAAARSVQESLQNGAPLSDDMGKKQPQEQRRFLMVVGINTAFSSRKRRDSIRATWMPQGEKR KRLEEEKGIIIRFVIGHSATTGGILDRAIEAEDRKHGDFLRLDHVEGYLELSGKTKTYFSTAFS MWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKTLDKTISSLEMELAAA RSVQESLQNGAPLSDDMGKKQPQEQRRFLMVVGINTAFSSRKRRDSIRATWMPQGEKRKRLEEE KGIIIRFVIGHSATTGGILDRAIEAEDRKHGDFLRLDHVEGYLELSGKTKTYFSTAFSMWDADF YVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKTLDKTISSLEMELAAARSVQES LQNGAPLSDDMGKKQPQEQRRFLMVVGINTAFSSRKRRDSIRATWMPQGEKRKRLEEEKGIIIR FVIGHSATTGGILDRAIEAEDRKHGDFLRLDHVEGYLELSGKTKTYFSTAFSMWDADFYVKVDD DVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKTLDKTISSLEMELAAARSVQESLQNGAP LSDDMGKKQPQEQRRFLMVVGINTAFSSRKRRDSIRATWMPQGEKRKRLEEEKGIIIRFVIGHS ATTGGILDRAIEAEDRKHGDFLRLDHVEGYLELSGKTKTYFSTAFSMWDADFYVKVDDDVHVNI ATLGETLVRHRKKPRVYIGCMKSGPVLSQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |