Detail information of BGIOSGA016741_circ_ig.1


General Information
CircRNA Name BGIOSGA016741_circ_ig.1
ID in PlantcircBase osi_circ_014559
Alias Chr07:13484619_13485664(MH63RS2), Chr07:14007385_14008430(ZS97RS2), Chr07:13484619_13485664(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24115503-24116548  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2, find_circ, CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTCACCCTTGCTATATAACCCCCCCTATACAGGTACCATTCTTTGAAAGTTAAGATGGAGT
AGAGATGGCCCTAATACTCCTACGGATGAATTAAAGggaacgaggctagagttgggacatctcg
attgtcagtgtacattatttcggtttcaattacagaaactcaggcaagtctctcttttgatcat
gttggtag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAACGAGGCTAGAGTTGGGACATCTCGATTGTCAGTGTACATTATTTCGGTTTCAATTACAGA
AACTCAGGCAAGTCTCTCTTTTGATCATGTTGGTAGATGATAATTATATTTCAACTTAAAAATC
TATTTCATACAAATTCTACTCCTAGTATTGCATCAAAATATATTTTCTAGAATATAATGATATG
AACGATGATGATATGATTGACAAGCCGATGACGATGGAGATCGTCGGGATACTAGTATGGTGGG
TAGGAGGAGTTCAGGGATGAGATGATTGATGATGATGGCAGGTCAGGGCTCTCCCTACATATGG
TGTATAAATATAAGGACTAATCACCCCATCACTCGTATCAGAGAACTGTATATACCGTGTTAAC
CATAGATCTATCTTAAGATGGGCTAGACCTAGTACCTTATCAAGTTTATTATACTCCACATGGG
TACGTAGTAGTAGAATGGGAGATGATATAAACCCCATGAATGCCGATGAAGTGCATTCCAGGTG
CATATAGTAGCGCAGTGGTGTGGAGAGCTGATAGGCTCAACACAAACGTGGAGTATAGTAAATT
GAAGTAGGGGAAAAGTTCTGTACTCTTAGCATGGTGCCGCATCTAGTGAAGTGCGACAGTCAAA
CATGTTAAGAGTAGCTATGGGTACAGTGATACAAGCCTGCGCAGTGCTAAATTAAATCGTGATT
CACGCTTGTCTCCTGGATTGGAGTCTACGGGAAGTTGCTACAAACTCTATTCAATGTTACGAGT
GTACTCTAGCTTTTATAAATCTCCTTTTGAAAACTCTTTTACAAAATAGAAATATACTTTATTT
TTTATGACAATGAAGGTTTTGATGTTACGTAAGGTATAGTATTGTAGTATATAGAGTTATATAT
TATTATTCATGCATATACATTTTGCTACTAATGACTTGCTGAGTACGAAAGTGCTCACCCTTGC
TATATAACCCCCCCTATACAGGTACCATTCTTTGAAAGTTAAGATGGAGTAGAGATGGCCCTAA
TACTCCTACGGATGAATTAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021