Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10070_circ_g.1 |
ID in PlantcircBase | ath_circ_001794 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3288431-3289619 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G10070 |
Parent gene annotation |
Branched-chain-amino-acid aminotransferase 2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G10070_circ_g.2 AT1G10070_circ_g.3 |
Support reads | 1 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G10070.3:6 AT1G10070.1:6 AT1G10070.2:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.168228035 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3288672-3289616(+) |
Potential amino acid sequence |
MYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRM KLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFI VYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLD SVKKKYLEEASSCNVFVVKLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFGLNP ADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNA IRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEY TFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVL YLDSVKKKYLEEASSCNVFVVKLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFG LNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPD HNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPA PEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFS DVLYLDSVKKKYLEEASSCNVFVVKLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNL GFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLF RPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGL GPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSR GFSDVLYLDSVKKKYLEEASSCNVFVVK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |