Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025024_circ_g.3 |
ID in PlantcircBase | zma_circ_010265 |
Alias | zma_circ_0000001 |
Organism | Zea mays |
Position | chr10: 100234413-100239819 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d025024 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d025024_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025024_T004:3 Zm00001d025024_T005:3 Zm00001d025024_T001:3 Zm00001d025024_T018:3 Zm00001d025024_T002:3 Zm00001d025024_T008:3 Zm00001d025024_T003:3 Zm00001d025024_T015:1 Zm00001d025024_T010:3 Zm00001d025024_T020:3 Zm00001d025024_T012:3 Zm00001d025024_T017:3 Zm00001d025024_T016:3 Zm00001d025024_T007:3 Zm00001d025024_T013:3 Zm00001d025024_T009:3 Zm00001d025024_T006:3 Zm00001d025024_T019:3 Zm00001d025024_T014:3 Zm00001d025024_T011:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.13535883 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
100234462-100239816(+) 100239756-100234527(+) 100234504-100239804(-) |
Potential amino acid sequence |
MYFMGPNTFREPWHLPYSPPDAIIGIVYEDAFNRFIDEINLVAAYEWWEGSIHSILSVLAYPCA WSWKQWRRRKKNHRLQEYVKSEYDHSCLRSCRSRALYKGLKVGSTPDLMVAYIDFFLGGDEKRL DVASTIQKRFPMCLIFGGDGSYMSPYYLHSDTLLSNLLGQVPGASRAEETQSHVHRMYFMGPNT FREPWHLPYSPPDAIIGIVYEDAFNRFIDEINLVAAYEWWEGSIHSILSVLAYPCAWSWKQWRR RKKNHRLQEYVKSEYDHSCLRSCRSRALYKGLKVGSTPDLMVAYIDFFLGGDEKRLDVASTIQK RFPMCLIFGGDGSYMSPYYLHSDTLLSNLLGQVPGASRAEETQSHVHRMYFMGPNTFREPWHLP YSPPDAIIGIVYEDAFNRFIDEINLVAAYEWWEGSIHSILSVLAYPCAWSWKQWRRRKKNHRLQ EYVKSEYDHSCLRSCRSRALYKGLKVGSTPDLMVAYIDFFLGGDEKRLDVASTIQKRFPMCLIF GGDGSYMSPYYLHSDTLLSNLLGQVPGASRAEETQSHVHRMYFMGPNTFREPWHLPYSPPDAII GIVYEDAFNRFIDEINLVAAYEWWEGSIHSILSVLAYPCAWSWKQWRRRKKNHRLQEYVKSEYD HSCLRSCRSRALYKGLKVGSTPDLMVAYIDFFLGGDEKRLDVASTIQKRFPMCLIFGGDGSYMS PYYLHSDTLLSNLLGQ(+) MEAICPHTIYIVIHCYQIFLARYQGQAGQKKLRAMSTECTSWDLILSESPGISPTHLLMR*(+) MPGLSESIRSHEVHSVDMALSFFCPACPWYLAKKI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |