Detail information of Solyc03g082850.2_circ_g.3


General Information
CircRNA Name Solyc03g082850.2_circ_g.3
ID in PlantcircBase sly_circ_001046
Alias NA
Organism Solanum lycopersicum
Position chr3: 52698304-52703022  JBrowse»
Reference genome SL2.50.38
Type   ui-circRNA
Identification method CIRI; find_circ
Parent gene Solyc03g082850.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc03g082850.2_circ_g.1 Solyc03g082850.2_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Solyc03g082850.2.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTTGCTTTGATAATCTTCTCCCTGGTTGTTTGGGTTGCAGGTTGATGTATATGCTTGTTAT
ATCTAAAAAGGGTTCCACCTAGTCACCAATTATTAGccaggattatgacggccatttcattcct
tcagcttgcagacatcgacaaacttttgcacagcattgcggtattgagttccctgtaacagtga
aacagggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGATTATGACGGCCATTTCATTCCTTCAGCTTGCAGACATCGACAAACTTTTGCACAGCAT
TGCGGTATTGAGTTCCCTGTAACAGTGAAACAGGGCAATCAGGCTTGGAGACTAATATACTCTT
TATTGATGCAATTGTTTAGATGTACATCTATAAAGTTGAGTCAATGCGAGTGATCTAATGTGAA
CATGTAATTTAAAACTCTAGGGGAGTGATAACATTCTCTTAGTTTCTCAAATTAGACACGTATC
TTTATTAGCATAAGAACCTTTTGAGGGAGGGGAAGGAAGGGGAGGCATCGGCGAAATCCCTCGT
GGGCTTCTGGTTCTAATTTTGGCACCAGGTTCATAACTCTAGGGAGTATTGGTCTGCTCCTCTA
TTTTTGTTCCAAACATAAATACTAGGGGCTTTGTCCGCCGTAGGATTTGAACTTGGGACATACA
CCTAACTCACACATCAAGTGCCGCATCCTTGAGACTAAACCAAAGCTTAGGCCAAAAGTAAAGG
CTATTCATTCCATTCTGAATCTACTGTTCTGTTTACCATGGACCAGTTATTTCACAACAGTCCC
ACATAAACTACCATCTAAGGTAGCAGTAATCACTGCAATAGATCAAACCCCGCGTGTCTTGGAA
CTTGGAAGGTGCTATTCAGCTTATAGCAGGAGATTGCGTGTTCAGGGGAATGAGAAACACTGTA
TAAAAGAAGATGCAGTGCTGATAGAGGATATGAAGTGTGGAAGCTGGAGCAAGGTCCCATAGAC
CTCAGGTGGAGATGTGAGGGACTTGGCTTGAGTATTGTAGGAGCCTAGGAGGGGGCTGCAGGTT
GATAATACCTTTTTGTCTTCCTTTTCTATATCTTCTGGGAGGGGTGGGGGAGAAGGGGGAGCCA
CTGTTGAGGGCTTTTTTAGCCTAGAGGTGCTGTTGAAAAGCATCAAAGCTACACTGATGTTTTG
GCTGCTAATGATGTTAGGAGCCCAGCAAAAGCATCTTTTATAGTTCTATTGTTTCTGAAAGTAG
TTCTCAATGTCTCTTTTTTCCATGAAAATATCACCTGTTTTCACCACATAAAAAAGAACACGAA
CTGGAGAAGAAATATAGAAGCTTTTAATATTGTTGGCACAAGTAGATGCAGAAATCCAAATGAG
CACCACCATAACTAAGATGAGGACATAGGAAAAAGGAAAATGGCAATGGCAATGTCATAGTAGC
AGATGGTCTTTCTCAGGCTAAGTTCGGGACTCTGCTGTTCTGGTATATACTATATTAACATCAT
AGTGATAATGTGATATGGTAATAAACTTGAAGCTAATATTGGGCTTATAACCAGAGTCCACACG
CCAATATCAGATCCCATACTATGTCATCTTCTCACAACAATGAAATGGTCCCACATCGATGATT
AATATCAGATCCCATACTATGTCATCTTCTCACAACAATGAAATGGTCCCCACATCGATGATTA
TAATAAGATGGGTGATATCTTTACAAGGCTTGGAAATCTTCATACCTTTGAGCTAGCTTTTGGG
GTGTGAGTTACATGTGAAACCTAATTTAACATAATATCAAAGCAGGACCCACCTCACCCAATGT
TGGGTTCCCAAATTAAATTGTCCACACTCCAAATGTCCAACCCTGGGTGTGAGGTGGGGGTTGA
AGAATGAAAAAAGCCTCACATTGATGGTTAATAGATCGATGGTCTACTTGTAAGGCTTTGACAA
TCCACCTCCCTTTGAGCTAGCTTTTGAGGTTGCAGTTAGGGCCCAAATTCTAATTTAACAAGTA
ATGAGATACAATGGTAACTTAATAAAACCTATCTAAATAAGGCCTTACATGTAACATTAATGAT
ATTTAGTAATTTCCTTTTATCTTCGTAAAATTCTGACAAGGGTGGTGATAGGGACAGCTAGTAG
CCTAGTATATGCGCACTCAGTCAATCCATCAAGCAGCCTGTTAGAACTCACAAATGTAGGTGCC
TATAACCATACCCACCAAGGCTCACCAAATGGACACCCACTTATTACGAGCTAGGATCCAAACG
TGGGATCTATGAGTTTTTATTCCTATATCTCGACCAGACATCCGTCCCATTGGAGACATGCTCC
ATTTAGTCCAAAGATCAGACAGAATCCAATTCACCACAGTGCCAACTTTATAGCTGTGACACCT
CCACTGAAAAAGAACAGATTGTAGGGTGCATATATCTTTTTCCACTACAAACAAAAAGAACCAA
CAGACCCAGAACTTTGCACAGCTAAGAAACTTCACATAAGAACAGCTTTCATTATGTAAACATG
GTTGACGGAATATAAGACATGAAAATTCCTCAACATGCAAGTCGTGACCCAAAGGCACTACAAG
TTCAATTCCATTTGTATATATCTCTACTTTTTTTTTATAGTAGGGAGGCAGAGGAAAATTATAT
CTGGAACATACACAATCCAACAAAATCTGATGGAGTAAATAGCAACTGAGAGTCTACCTCCCAG
TAAAGTTGCTTGCAATCCATGCATTGCCAAAATTCCAAATTCTTGTTAAACAAGCAGTTTGGAA
TCACCTGAAATCCCTTAGCTGCTTCAACAGCTTCTTCTGTCGTCAGAGGTTTTTGGATGAACTT
ACCGTTGCATTTTGTGCACCTTGACATCAACTGGTCCTCAGAAATTTCCAGTTGAAAAGTTTCT
ATTACCTGTAGGTATGCAAGGTAATATTGCCATGAACAGATGGTTGACAAATTGTCAGAAAATT
TTATAATACTGTTCACTTGCACTCCTGCCCCCCATCCCCCTTTCCTCTCACATTTTATTCATTC
ATTCAAAACATTTTCATGTCTAACTCCATGCTCTACAATTTGAAGCATTCATTTTACCTCAACC
AATTGATCGTTCTTTAGAAGACTCTTCACCCGGTATATCTGATTTTTTAAAAGATAATCATGTC
TCAAGAGTTTGGCATCTCGCGTTAAGAGTACTCTCTTCTCTTTACAGGCTTGTTCAATTAAATC
CCTGAAGAAGAAAAAGTCAGAAAAGTTATCACAACACCATCTACAGAAAACGGATGTTTATTGA
GTTTCCACTTAGAATCAAGTAAATGAAGAATCAAAAATCATTCAAAACCTCGATTCAGGCTTCT
TTGAATAAGGAACAGCAGCATCAATGCCAACACATCTTAAATGTTTTGCCAATCCTTCAACCTG
AAAGATTACCACAAGTCACAACCTCCATAACAACCACAAAAAGAAGAAAAATATGTCATACTTT
CGACTCCCAAAGAAAGAGAAAGAGGAGAAATCTCCACCTTAACGCAAGAGAGAGCATTCAAGAA
GCCTAGGTGTATCAGTTTTACAGAAAAGCAATATTTGTAACTAAAATATGGTATCTCACCATCA
CATCACATAGAAACTTAGGACACCCATCCCCACCGGAGGTTGCATCCCAGGGTGGTGGACCTTG
CCATTCTTCACCACCTTCTGTTGGACTGCGTGTGTTTGCTACTCTACCAGATGATTTCTTTGCC
TTCTTTCTCGAAATTTTTGGTTTTCTATCAGATTCACTTAACAAAATTTTATCACCATACTTCC
TGACAATTTGTGAAAGCACGTAATCCATCCGATTAGCTTGATCTGGTGGCAGTGCAGTAACCTC
TTCATCTGATATGGGGACGGTTTTACAAAAATCAGGCGGGATAGCTTGGACCATCTCTAAAGCT
TCACCAAATTTGATACCACACATTTTGTTAGAGTTTTGTTGTGTGTCAAATATCTGTTTCAAAC
CAAGATCCAGATGATACAACTGGAGACCCGTTGTACTTTCGACAGAATTCCCTGAAATGGACCG
GTTACCAAATGTAAATAGGACAAACAAGATAGACATAATGCAGTAAAAAGGGAGTTTTTTTGCC
TATGATGATCTATAGCTCCTGATGACTGATGGGACATAGCTCGCCTTTTCGTTTACTGTTTGTT
CTGGGGCATCGCAGATCTGAAATCTAGAAATCAAAACATAATTGGACATCTGGGGTACAAAGTC
AGGGCCAAATATGGACTAATCTCTCTCCTATCACTGCACTGCTGCAAACACTTGACATACCAAA
GCTTCTTTCAGAAGAGCATACTGTATTACCCCAACACACACAGAAGCAAACTCACTTTTGTTGT
TCAAAAGGAGATATACTCCAACAGAAACCTAGAGAACATGCTCAAGACACCTAACTTTCTAGAC
AGAACTATCTTTCCAATCAAGGAAGTACGTTACTGGTGTATCAGAGCTGCTTCATGGAGGTTGC
AACACGTAGGCATGCACTGGAAGAAGATGAAAAAGGTACTTCACCAACCTTCTGTCACCGCCTT
ACTCTTGAAGACTTCAAGGATATGAATCAAACAATAAGCATCAACTGCTGCGTATTGCATTTGC
TCTTCTGTCAGTGGACGCTGTGACCAATCACTGCATTGGAGTTCCTGTACTCGAGATGCAACAA
AGTAAAACAAATGTAGTATTTCAAAAATTTGTAATAAATTCATATTTATATTTCTGAGAAATAA
AATGTCAAATATCAAGACTGCACACCTTTGATAAAGGAATCCCCAAAACCTCCTGGCAAATTGT
TGCCAAGCTCTTTGTTTGCTTTGATAATCTTCTCCCTGGTTGTTTGGGTTGCAGGTTGATGTAT
ATGCTTGTTATATCTAAAAAGGGTTCCACCTAGTCACCAATTATTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.141282027
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020