Detail information of Os03g0352500_circ_igg.1


General Information
CircRNA Name Os03g0352500_circ_igg.1
ID in PlantcircBase osa_circ_019847
Alias NA
Organism Oryza sativa
Position chr3: 13241919-13246446  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0352450_circ_ig.2 Os03g0352500_circ_g.1 Os03g0352500_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGGGCATCAAGGTTGACAAAGAAGGAGATTTGATGCTTGAAGACTTGGATGATCAAACTTCA
GGGGCTGCAGAACATGATAACACATCAAGCAAAAAGcatgctattttaaagcccttcatgctcc
gtcgagttaagattgatgtcattgcagaaatgaccaaaaagaaagaagaaattgtgccctgcag
attgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGCTATTTTAAAGCCCTTCATGCTCCGTCGAGTTAAGATTGATGTCATTGCAGAAATGACCA
AAAAGAAAGAAGAAATTGTGCCCTGCAGATTGAGTTCTCGCCAGCAAGTCTTCTATCAAGCCAT
AAAGAATAAAATATCTCTTAACGAGTTGCTTGATGGAAGTCGTGGCAATCTAAATGATAAGAAA
TTACTTAGCCTGATGAATATTGTGATGCAGCTCCGGAAGGTAACATTAGCACAACACCTTCTTG
CATGTGATCAATTTACTTGACTTAATAATCATTAAGGTCCCTTTAGCAATTTCAGCTAATGTTT
ACTCTGTTGTTTCTCATTGGATTTCCTCCCAATGTGTTATGTATCACATTTAGGTCTGCAATCA
TCCAGAGCTGTTTGAGCGCAATGAGGGGAGCTCTTACTTTTACTTTGCTGACATCCCGAACTCA
CTTCTTTCTCCTGCATTTGGGGAATTGCAAGATGTGCATTATGCAGGGAAGAGGAATCCAATAA
TGTTTGAGGTATAATTAAACATATGGTCAGATTTTTCTGTTTCTAATTGGCGTACTTGCAGTTA
CCTTATGTATTCTCCTTAATTGCTAACTAAACTGATAGGCTTCTTTCTGAACCTTTTCAGATTC
CAAAGTTAGTCTACAAAGGAATCGTCTCGAACATGGAAATGCCTGTGCGTGGTTGTGGATTTCT
ATATGGATCTTTCAACAGGATGTTTAATATATTTTCGCCAAGCTACATCCATCAATCAGCTTTT
CCAGAAGCTATCTCACCAAATAATACTGTTCTGTTATCTGGTGCATTCGGTTTTACACGTTTAA
TAAATCTCTCCCCAGTTGAAGCTTCTTTCCTGGCCACTTGCTCATTATTCAACAGACTAGCATT
CTCAGCAGTGCGATGGAACAAGAAGTACACCGATGAACTTGTGGATGTATTCCTTGACTCAGAA
AGTACTGATCTTGAGTCCACTCATAATGATTTAACAACAGTTCGTGCTGTTGTTCGCTTGTTGC
TTTCACCTACAAAAGCAGAGTCCAGTTTCCTAAGAACAAAGATTGAGACAGGCCCGAGTGATAG
CCCATATGAAGCACTAGTGCTTTCTCACCATGAAAGGCTTGTGTCTAACATAAGACTTCTTCGT
TCAACATATGCTTTTATTCCACCTGCTAGAGCACCACCGGTAAGTTCCTTTATTTTATGTGATG
ACTTGTTTTCCCAGTTCTATCATTTGTATGTTGCATCAGGCTGTGTATGGAGTTGTCTTACAGT
ATTCTTAGGCTACTCTAGTATTAAAAGTATTCAAAACTTCCATATAGTGTAGGAAATGTATTTA
TTTTATCTACACAAGCTATCAATGCTCAATTGGTGCTACTATTGAATGACTCATTACCCTTTTC
TTTCGTTTCAGATAAATGTCTGGTGCGCAGACCGAAATTTTGCCTACAAGTTAACTGATGAGAT
GCATGATCCATTGGCCAAGAAACTGGTTCTGGGATTTGCTCGAACTTCTGAGTTCAATGGCCCT
AGAGAACCAACCAGCCCTCATTCTCTGATAGAAGAATTACATACTGATTTGCCATTCCCCGAGC
CGATGCTACAACTGCCATATAGGATATTTGGGTCATCTCCACCTATGAGTAACTTTGACCCAGC
TAAAATGCTTACAGTAAGTGTTCTCTAATTTCCTCTGTCCATGATGCTAGGGTATTGCCTATTT
AGATTTTTCTTCATCTGCACAATTCTGTCATTCATAGTTGTATTTTTTTTTCCCAATGAACTGC
TCAATTGCTTTGAAAAGCTCTAAGATTTGTGTAGAATATAACTTTATCATAATAAGTTGGTTCA
AACACCTGAATAAAGGACAAATTGTTTGTGTTTTCATTAATATGCTTTTAGCTGTACCAGTGAG
TTCTTTTTACTAACATGAAATGCTCAATGACAGGATTCTGGGAAGCTCCAAACCTTAGATATAC
TGCTGCGGCGCCTCCGAGCTGAGAATCACCGTGTGCTCTTATTTGCTCAGATGACTAAAATGTT
AGACATTCTTGAGGTAGTACTGGTCACTTCATGCTTGTCCACTTTACACTTAAAAGTATAATAC
CACCATAAGGTAATTGAGTTTTTTCTTAAAAAAAAAACTAAAACAAGTGACTTTTGCTTGCGCC
TTTTACTCATAAGTGATATAGAGATTCTCTAAGTGCCTGGAGATAAGTTGTTTTATTGCATACA
ACTTTAGATATGTTTTTGGCATTCTGCAAGTCAACAATCTTTGGTCAATTATCAGATCTCAATA
CAAAATACTTTATGCTTTGAACCGAAGCATGTTTTGTAATATTTACCATTAGACACTGCATATG
TCCTATACTACATGTAGGCCTTACAATATAAGAATATTCTTGTAGCATTAGGGTAGTGTCATGA
CTTCAATATGTGAGTCTTCGCTTAGCATATCATCTTTCAGGAGTTTTTAGTTTCCATTTCTTTT
GCTGGCACTGTGAATTGCATCAACCGAAAAGTAGATATTGGAGTATTTTTCTTGTATTTTTGCT
CACTAAAGTTGAGCCCCTTTCTAACTACTCAGCAATTATGCATTGCTATTGTTCTAGGACTACA
TGAACTTCAGAAAATTCAAGTATTTCAGACTTGATGGGTCATCGGCAATATCTGATCGACGTGA
CATGGTCCGGGACTTCCAGAACCGGTATGCATTAGTGGATAAAGGATAATGTACAGTAAGATGA
TCTAACGCCATGCTATTCAAACATGGCTTACCTGAATTTTCTTCTCTGCAGGAACGATATATTT
GTTTTCTTGCTAAGCACAAGAGCTGGGGGCCTAGGTATTAATTTGACTGCTGCTGATACAGTTA
TTTTTTATGAAATTGATTGGAACCCAACACAAGACCAGCAAGCAATGGATAGAACACACAGACT
TGGTCAGACAAAGGAGGTAACTGAAGCTTCAGTTATAAATACTTTATCTAATCATAGTACTATA
GCTTATAGTGTGCTCCTCAGCTACGTATTTCTTTTGGAGCATTTTTCTGCCTTTTATGGCAACT
CTTTTTAGTGATGCCCCTCCTTTTTTTTTTTGGTTTGACGTTGGTTAGCTCAAAACTGAACTAA
CCAACGTCAAACATTTGGAAACGAAAGGAGTATTAAATAGCACTGGCACGTCACAAAATAGCTC
AACTCTTTTTAGCGCATTGTCCATTATCTATATTTATAAATTATATAACACTATCATTTGAATT
TTGGAATGAAATATGTGGTAGCTCATTTCCTTGTATTTTCTTTCAAATTGGTATTGTAGGTAAC
GGTGTATAGACTTATATGCAAAGATACAATAGAAGAGAAGATATTGCAGAGGGCAAAGCAGAAA
AATGCAGTGCAAGAGTTGGTCATGAAAGGAAAACATGTCCAGGATGATCATCTGATGAGACAAG
AGGATGTTGTTTCATTACTTATTGATGACACACAGATATCGCACAAATTAAAAGAAATATCAAT
GCAGGTATTTTTTATACTACTTCCATCTTTTATTTGGCACATCGCATTGTTTTCATCTAGTCCA
CCCATATACTTGAAACGTTGACAGCATACATGGATGACCTAGATTTGAGATGTAAGAACTAGAT
TTATAATCGAACTAATCTCCCTTTGCCTACCAATCAGTGGCATGCTTTTGTTCATTTTTTCCCC
ATTTAGTAACACCTGTTTGGCATATGCTATTCAAACTCTTTGAATAGTTGCAAATCACCGTGTT
ATTAATGTTCTCAAGATGATTGGGAAAATCTATCCCCATTGGGACAATAAACCAACCATAGGGC
CCACCCCTTATTAGATTCAGTGCAAAAACCTTACTACTTTTATTGAGTTAAGACTTGATTCATG
ATTGGTTGATTTCTGGTTCTGCCAATTATCAAGGAGTTTATGTAGTGTATTATTGAAAAACTTA
AGAAAACAACCTCAAAAAAGTACGAAGCTTATTTCTCCTGTTTGTTTTTGAGATTTTGCCTAGT
TCATTTTATGGTTTGCATTAGAAAACGTATCATCATGAAAGCATTTGGAAACCTTTCATTGGTT
TATGGAAGAGTTTGGCGACCAACTTTTTTTCTTGTTGGTATTGTACTATAACAATTGTTACACA
TGTCATCTTATTACATGTTATTAGGTTTTACATGCTGTAGAACAACAAACCTTGAATTAAAATT
GCTGCAGTAATATGGCAAAAGATGAGGTTGTTTGAATTGGTTTCTTAATAGAATGTCCGTTGAG
TTTTCGTTATAATGAAATATTGAGTATGGCATGGAATGTCAACATGTTTTATTTAATTTCAATG
GAAAAAAGTCGGGTGACAATGTTTTTCATTTCTATTTACCCTTTTAGGCAAAGGACCGACTAAA
AAAGAGGCGTACAAAGGGCATCAAGGTTGACAAAGAAGGAGATTTGATGCTTGAAGACTTGGAT
GATCAAACTTCAGGGGCTGCAGAACATGATAACACATCAAGCAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.214890546
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017