Detail information of Os09g0248000_circ_g.5


General Information
CircRNA Name Os09g0248000_circ_g.5
ID in PlantcircBase osa_circ_038536
Alias NA
Organism Oryza sativa
Position chr9: 3626207-3626468  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os09g0248000
Parent gene annotation D-aminoacyl-tRNA deacylase domain containing protein. (Os09t0248
000-01);D-aminoacyl-tRNA deacylase domain containing protein. (O
s09t0248000-02);Similar to Ethanol tolerance protein GEKO1. (Os0
9t0248000-03);Similar to Ethanol tolerance protein GEKO1. (Os09t
0248000-04)
Parent gene strand +
Alternative splicing Os09g0248000_circ_g.4 Os09g0248000_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATGCTGCTTGAAATTTCAGCTTTTACCTGTTTTCATGGATGCTATCTTTTACTTCTGAATCA
TGCCTAACCGAAACCCTTTTTACTATACTCAATATGttgagtcattttctctgttctcttctac
tgtgtatatgttctttgtacttgatttccaagaggaactaaaggtatctagtttgaaccacaag
attatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAGTCATTTTCTCTGTTCTCTTCTACTGTGTATATGTTCTTTGTACTTGATTTCCAAGAGGA
ACTAAAGGTATCTAGTTTGAACCACAAGATTATATGTGATAAAAAGGTTTAAATTGATATAATT
TTTCTTGGCACATTTCTGTGCATTGTCCGTATCCAGATGCTGCTTGAAATTTCAGCTTTTACCT
GTTTTCATGGATGCTATCTTTTACTTCTGAATCATGCCTAACCGAAACCCTTTTTACTATACTC
AATATG
Conservation Information
Conserved circRNAs NA
PMCS 0.161962595
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017