Detail information of AT3G07960_circ_g.2


General Information
CircRNA Name AT3G07960_circ_g.2
ID in PlantcircBase ath_circ_020396
Alias 3:2536938-2537340
Organism Arabidpsis thaliana
Position chr3: 2536938-2537340  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07960
Parent gene annotation Phosphatidylinositol 4-phosphate 5-kinase 6
Parent gene strand +
Alternative splicing AT3G07960_circ_g.3
Support reads 1/1
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G07960.4:2
AT3G07960.1:2
AT3G07960.2:2
AT3G07960.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAAACCAGAGTCCGAAATCGATCCAAACACGACGCTTAAAGATCTTGATCTAAATTTTGCATT
CCGATTGCAAAAGAACTGGTTCCAAGAATTCTGCAGgttcttataaggatgcttccggcttact
acaatcatgtcagggcgtgtgaaaacactctagttaccaagttcttcggtcttcattgcgtgaa
attaactg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 311
Transcript exons: 2536938-2537054,2537147-2537340
GTTCTTATAAGGATGCTTCCGGCTTACTACAATCATGTCAGGGCGTGTGAAAACACTCTAGTTA
CCAAGTTCTTCGGTCTTCATTGCGTGAAATTAACTGGCACTGCACAGAAAAAGGTTCGATTTGT
GATAATGGGTAATCTTTTCTGTACTGGTCACTCCATCCATAGGCGGTTTGACCTCAAAGGATCC
TCTCATGGCCGTCTTACTACTAAACCAGAGTCCGAAATCGATCCAAACACGACGCTTAAAGATC
TTGATCTAAATTTTGCATTCCGATTGCAAAAGAACTGGTTCCAAGAATTCTGCAG

Genomic sequence GTTCTTATAAGGATGCTTCCGGCTTACTACAATCATGTCAGGGCGTGTGAAAACACTCTAGTTA
CCAAGTTCTTCGGTCTTCATTGCGTGAAATTAACTGGCACTGCACAGAAAAAGGTCAATGCCTT
TTTTGTATTCATGTCTCTGCATTGTTGTGATTAGCATTTTCAATTTTGGATGTACTGATGATAG
AATACTTGCGCCTGCAGGTTCGATTTGTGATAATGGGTAATCTTTTCTGTACTGGTCACTCCAT
CCATAGGCGGTTTGACCTCAAAGGATCCTCTCATGGCCGTCTTACTACTAAACCAGAGTCCGAA
ATCGATCCAAACACGACGCTTAAAGATCTTGATCTAAATTTTGCATTCCGATTGCAAAAGAACT
GGTTCCAAGAATTCTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.394294923
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020