Plant Circular RNA Database

Detail information of Os12g0165900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os12g0165900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_010583
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 3338727-3341856  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							Os12g0165900						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os12t0165900-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os12g0165900_circ_g.1 Os12g0165900_circ_ag.1 Os12g0165900_circ_ag.2 Os12g0165900_circ_ag.3 Os12g0165900_circ_ag.4 Os12g0166000_circ_g.1 Os12g0166000_circ_g.2 Os12g0166000_circ_g.3 						
					
						Support reads
						11
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0165900-01:4

General Information
CircRNA Name	Os12g0165900_circ_g.2
ID in PlantcircBase	osa_circ_010583
Alias	NA
Organism	Oryza sativa
Position	chr12: 3338727-3341856 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	Os12g0165900
Parent gene annotation	Hypothetical conserved gene. (Os12t0165900-01)
Parent gene strand	+
Alternative splicing	Os12g0165900_circ_g.1 Os12g0165900_circ_ag.1 Os12g0165900_circ_ag.2 Os12g0165900_circ_ag.3 Os12g0165900_circ_ag.4 Os12g0166000_circ_g.1 Os12g0166000_circ_g.2 Os12g0166000_circ_g.3
Support reads	11
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0165900-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTCACATCGAGCTTCCCATCTTTTTCTGGGAGCCTATTCAGCCCACCTACTCCTGTGGCGACT
GGTGGATTGTTTGGCAGCGGGCCTTCACCCTCAACGcatttgggcagtcgtcgactagcccttt
tgggcagacctcaagcaacccattcggggcacagacaggcggatttggccaggcgaacactacc
accaccaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATTTGGGCAGTCGTCGACTAGCCCTTTTGGGCAGACCTCAAGCAACCCATTCGGGGCACAGAC
AGGCGGATTTGGCCAGGCGAACACTACCACCACCAATCCTTTTGCGCCGAAACCCTTTGGCAGC
CCGATCACCGCATTCGGGGCACAGACAGGAAATTCACCTTTTGGCACGACGTCCACCGGAGCCT
TTGGCCAGCCATCTGCTCCGACGTTTGGCTCGACGTCTACCGGAGCCTTTGGCCAGCCATCCGC
TCCGGCGTTTGGCTCAATGTCCACCGGAGCCTTTGGCCAGCCATCCGCTCCGGCGTTTGGCTCA
ACGTCCACCGGAGCCTTTGGCCAGCCATCCACTCAGGCGTTTGGCACTCCGTCATCCTCTCCAT
TTGGGAGCTCTACACCAGCTTTTGGTGCATCACCAGCCCCAGTGTTTGGTGCCACATCGTCTAC
CTTTGGCAGCGGTTTGTACTTCCGGCATTCATTCTCTTCCGTATGTTATTTTATTCAACTTAGA
ACCATGTATACTATGCACTTTTACTGGATATGCACTAGTCGTGCATATTTGTTCAATATTTCAT
TGCTATCATAGTAACTCTGGCTATAAAGCCGTTCTGGCTCTCAAATATATTCAGTATATTGTAG
ATCCTTAGCTCGTTGGACATTTCCTTTTCTGGTACCTACAGTTATGCAATCCCGATTTTATAAA
CTGATGCTCTCGCGCTTGTTTATTCACAAAAGAAACAATGCTAGAAAATATGTTTTTTATTTGG
TTCTCTTGTTGGGCTGGCAGTGCTGGTTGTCCAACTTTGCTGAGAAATTCTACAACAGAATCTG
CCTAGACTGTCTAGTGCAACTTTATTGATTGTGCTATCCAGGACAAACAGTTTGCAACCAAGTT
TGTGATCTCTATATGACTAGTTCTGTAGAAGAATTTCGGGGCTTGAATTTTGTGAAAGATAAGG
TAATATTTGCTTGACCACTAAGTACCAAAATGCGGGAGTAAAAGGTGAGAGAGCCTGAGGATGA
AAATGTCAATTCTCCTTAAATTGGCAACTTAACTATCCACTGTGATGAGGCAAGCACACATATG
TATTACAGTCTAGCAATATTTTATAATAAAATTTAAAATGGCAATCTTGCCTCATCTAAGTACT
ACATAAGTGTGCTTGCCTCATCATAATCTTTCAAACTTGCTTAAGGAAAGTAAAAAGGCTAACA
TATGTATATCTTGTAAGTTCTCCCATAGCAGTAAGTTCCACTGTGAGTATTTTGATCAAACATG
CTTATAGGAGAAACTTGAAATATGATATGTGATGTTTTCTACATTTGTTATAGAGATACTCAGT
TTCTCAATAATGAGCGATGTTGTTTCATCATCTTGAGTTATGAATTGATCTTTTTGATTTATCA
TTTTGTAGTACGTGTGACATGATAACCACCAAATTTGCAGGATCATCATTGTTTGGACAAAAGC
CAAGCTTTGGCGGTTTTGGTTCTTCTCCTAGCCAGTCTAGTGCTTTTGGAGGTCCATTCCAGCA
AGCACAACCAGCATTTGGTGGCAGCACTTTTGGCGCGGCAAGCACGCCGACCTTTGGCACCACA
ACTACACCATCCTTTGGTGCCACAACTACACCAGCATTCGGCACGACCACCCCAGCATTTGGTT
CAACATCTACATCTGTATTCGGTGCTTCAAGTGCCCCAGCATTTGGTTCTACAGGCTTTGGTTC
ATCCACCACTCCTGGTTTTGGATCTTCAGGTACTACAGCCTTTGGTGCAGGTAGTACTCCAGGA
TTCGGAGCTTCAAGCTCTGGCATGTCAACTAGTGCTTTTAACTTTGGCTCTTCTCCATCTTTTG
GTCAAACAATACCTACATTCGGTAGCACTCCCTTTGGAACAACTTCATCTACTTTTGGCTCACA
GACATCTACATTTGGTAAGTTTTTGTCCATGATCTTATTGTCTTCCCCTCCACATGCTATACTT
CTTGGTGTTAGATTCTTTTGTTATCCCCTGATGCCTCACCTCTGCAATCCTTTTTTGTCTCTAC
TTCTATCCCCTGATGCCTTATCTTGAATGTTTTCTTTGAGTTTCAGGATCACAGACAACAGCAC
CAGCATTTGGGCAAACATCATTTGGGAATCAAGCTGGAGGAACCAGAATACAGCCTTATACTCA
AACACCAGATGCGGACAGTGCTACAAGTGGTACTCAGCCTGCTGCAAAATTGAACTCAATATCA
GCCATGGAGGCATACAAAGCGAAGAGTCATGAAGAGCTGAGGTGGCAAGATTACCAGCGTGGAG
ACAAAGGTGAGTCTTTTTTTGGGATTGTGTGTTTTGCACTTCGTTTGTAAACAATCTCTTTAAC
CATCACATTTAATTGCTTTTGCATGAACTCTTTATCATGTTTTTTCTTTAAAAAAATAAACGAA
GTTACTTTTATGTATTAGTTGCTGCGGTGGCGTAGTTCAAGCACTTTTGGTTGATTACAAATTT
AAAATGGCAAATTATACTGATAGAGCTAGCCTTTTATGCTTCTGTAGTTCATTCTGCATTATTA
TATGTTTAGTTCCATATGCCTTCTTTCTGTACAATTTTTGAGTAATTCATTATTTTTTAACCCT
CAGGTGGACCAAATCCTTCAGGAACTCCAGCAGTGACCCCTAGCTTCCCATCTCCAGTCAACAA
CCAATTTTCCCCAAACCCTCCAAATGCATTTCCATCAGCATCTGCGAACAATCCATTTGCTCCC
AAGCAGCCTTCAACTGGTTTTGGTTCTATTTCATCCGTGTTCAATTCAATATCCAGTAATACAG
CACCAGCAAGCTCAAGCCCATTTGCACCAACTATAAGTAACCCATTTCCTACACAAACAAACTG
TTCTCAGTTTGTAAATTCCGCTTCTAGTCCTTCTCTATTTGGCACAATAAACCAAAACTCATTC
AGTACGTCTGGGACTAACAGTCAATCAGTTGGGCTATTTGGTCCTTCCCCATCAATTGTGCAAC
AGCCCAGCCAGGCATCATCAGGGTTCACATCGAGCTTCCCATCTTTTTCTGGGAGCCTATTCAG
CCCACCTACTCCTGTGGCGACTGGTGGATTGTTTGGCAGCGGGCCTTCACCCTCAACG
						
					

			
		

Sequences
Splice junction sequence	GTTCACATCGAGCTTCCCATCTTTTTCTGGGAGCCTATTCAGCCCACCTACTCCTGTGGCGACT GGTGGATTGTTTGGCAGCGGGCCTTCACCCTCAACGcatttgggcagtcgtcgactagcccttt tgggcagacctcaagcaacccattcggggcacagacaggcggatttggccaggcgaacactacc accaccaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATTTGGGCAGTCGTCGACTAGCCCTTTTGGGCAGACCTCAAGCAACCCATTCGGGGCACAGAC AGGCGGATTTGGCCAGGCGAACACTACCACCACCAATCCTTTTGCGCCGAAACCCTTTGGCAGC CCGATCACCGCATTCGGGGCACAGACAGGAAATTCACCTTTTGGCACGACGTCCACCGGAGCCT TTGGCCAGCCATCTGCTCCGACGTTTGGCTCGACGTCTACCGGAGCCTTTGGCCAGCCATCCGC TCCGGCGTTTGGCTCAATGTCCACCGGAGCCTTTGGCCAGCCATCCGCTCCGGCGTTTGGCTCA ACGTCCACCGGAGCCTTTGGCCAGCCATCCACTCAGGCGTTTGGCACTCCGTCATCCTCTCCAT TTGGGAGCTCTACACCAGCTTTTGGTGCATCACCAGCCCCAGTGTTTGGTGCCACATCGTCTAC CTTTGGCAGCGGTTTGTACTTCCGGCATTCATTCTCTTCCGTATGTTATTTTATTCAACTTAGA ACCATGTATACTATGCACTTTTACTGGATATGCACTAGTCGTGCATATTTGTTCAATATTTCAT TGCTATCATAGTAACTCTGGCTATAAAGCCGTTCTGGCTCTCAAATATATTCAGTATATTGTAG ATCCTTAGCTCGTTGGACATTTCCTTTTCTGGTACCTACAGTTATGCAATCCCGATTTTATAAA CTGATGCTCTCGCGCTTGTTTATTCACAAAAGAAACAATGCTAGAAAATATGTTTTTTATTTGG TTCTCTTGTTGGGCTGGCAGTGCTGGTTGTCCAACTTTGCTGAGAAATTCTACAACAGAATCTG CCTAGACTGTCTAGTGCAACTTTATTGATTGTGCTATCCAGGACAAACAGTTTGCAACCAAGTT TGTGATCTCTATATGACTAGTTCTGTAGAAGAATTTCGGGGCTTGAATTTTGTGAAAGATAAGG TAATATTTGCTTGACCACTAAGTACCAAAATGCGGGAGTAAAAGGTGAGAGAGCCTGAGGATGA AAATGTCAATTCTCCTTAAATTGGCAACTTAACTATCCACTGTGATGAGGCAAGCACACATATG TATTACAGTCTAGCAATATTTTATAATAAAATTTAAAATGGCAATCTTGCCTCATCTAAGTACT ACATAAGTGTGCTTGCCTCATCATAATCTTTCAAACTTGCTTAAGGAAAGTAAAAAGGCTAACA TATGTATATCTTGTAAGTTCTCCCATAGCAGTAAGTTCCACTGTGAGTATTTTGATCAAACATG CTTATAGGAGAAACTTGAAATATGATATGTGATGTTTTCTACATTTGTTATAGAGATACTCAGT TTCTCAATAATGAGCGATGTTGTTTCATCATCTTGAGTTATGAATTGATCTTTTTGATTTATCA TTTTGTAGTACGTGTGACATGATAACCACCAAATTTGCAGGATCATCATTGTTTGGACAAAAGC CAAGCTTTGGCGGTTTTGGTTCTTCTCCTAGCCAGTCTAGTGCTTTTGGAGGTCCATTCCAGCA AGCACAACCAGCATTTGGTGGCAGCACTTTTGGCGCGGCAAGCACGCCGACCTTTGGCACCACA ACTACACCATCCTTTGGTGCCACAACTACACCAGCATTCGGCACGACCACCCCAGCATTTGGTT CAACATCTACATCTGTATTCGGTGCTTCAAGTGCCCCAGCATTTGGTTCTACAGGCTTTGGTTC ATCCACCACTCCTGGTTTTGGATCTTCAGGTACTACAGCCTTTGGTGCAGGTAGTACTCCAGGA TTCGGAGCTTCAAGCTCTGGCATGTCAACTAGTGCTTTTAACTTTGGCTCTTCTCCATCTTTTG GTCAAACAATACCTACATTCGGTAGCACTCCCTTTGGAACAACTTCATCTACTTTTGGCTCACA GACATCTACATTTGGTAAGTTTTTGTCCATGATCTTATTGTCTTCCCCTCCACATGCTATACTT CTTGGTGTTAGATTCTTTTGTTATCCCCTGATGCCTCACCTCTGCAATCCTTTTTTGTCTCTAC TTCTATCCCCTGATGCCTTATCTTGAATGTTTTCTTTGAGTTTCAGGATCACAGACAACAGCAC CAGCATTTGGGCAAACATCATTTGGGAATCAAGCTGGAGGAACCAGAATACAGCCTTATACTCA AACACCAGATGCGGACAGTGCTACAAGTGGTACTCAGCCTGCTGCAAAATTGAACTCAATATCA GCCATGGAGGCATACAAAGCGAAGAGTCATGAAGAGCTGAGGTGGCAAGATTACCAGCGTGGAG ACAAAGGTGAGTCTTTTTTTGGGATTGTGTGTTTTGCACTTCGTTTGTAAACAATCTCTTTAAC CATCACATTTAATTGCTTTTGCATGAACTCTTTATCATGTTTTTTCTTTAAAAAAATAAACGAA GTTACTTTTATGTATTAGTTGCTGCGGTGGCGTAGTTCAAGCACTTTTGGTTGATTACAAATTT AAAATGGCAAATTATACTGATAGAGCTAGCCTTTTATGCTTCTGTAGTTCATTCTGCATTATTA TATGTTTAGTTCCATATGCCTTCTTTCTGTACAATTTTTGAGTAATTCATTATTTTTTAACCCT CAGGTGGACCAAATCCTTCAGGAACTCCAGCAGTGACCCCTAGCTTCCCATCTCCAGTCAACAA CCAATTTTCCCCAAACCCTCCAAATGCATTTCCATCAGCATCTGCGAACAATCCATTTGCTCCC AAGCAGCCTTCAACTGGTTTTGGTTCTATTTCATCCGTGTTCAATTCAATATCCAGTAATACAG CACCAGCAAGCTCAAGCCCATTTGCACCAACTATAAGTAACCCATTTCCTACACAAACAAACTG TTCTCAGTTTGTAAATTCCGCTTCTAGTCCTTCTCTATTTGGCACAATAAACCAAAACTCATTC AGTACGTCTGGGACTAACAGTCAATCAGTTGGGCTATTTGGTCCTTCCCCATCAATTGTGCAAC AGCCCAGCCAGGCATCATCAGGGTTCACATCGAGCTTCCCATCTTTTTCTGGGAGCCTATTCAG CCCACCTACTCCTGTGGCGACTGGTGGATTGTTTGGCAGCGGGCCTTCACCCTCAACG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.111686581

Conservation Information
Conserved circRNAs	NA
PMCS	0.111686581

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3339000-3340952(+)
						
						Potential amino acid sequence
						
							MSTGAFGQPSAPAFGSTSTGAFGQPSTQAFGTPSSSPFGSSTPAFGASPAPVFGATSSTFGSGS
SLFGQKPSFGGFGSSPSQSSAFGGPFQQAQPAFGGSTFGAASTPTFGTTTTPSFGATTTPAFGT
TTPAFGSTSTSVFGASSAPAFGSTGFGSSTTPGFGSSGTTAFGAGSTPGFGASSSGMSTSAFNF
GSSPSFGQTIPTFGSTPFGTTSSTFGSQTSTFGSQTTAPAFGQTSFGNQAGGTRIQPYTQTPDA
DSATSGTQPAAKLNSISAMEAYKAKSHEELRWQDYQRGDKGGPNPSGTPAVTPSFPSPVNNQFS
PNPPNAFPSASANNPFAPKQPSTGFGSISSVFNSISSNTAPASSSPFAPTISNPFPTQTNCSQF
VNSASSPSLFGTINQNSFSTSGTNSQSVGLFGPSPSIVQQPSQASSGFTSSFPSFSGSLFSPPT
PVATGGLFGSGPSPSTHLGSRRLALLGRPQATHSGHRQADLARRTLPPPILLRRNPLAARSPHS
GHRQEIHLLARRPPEPLASHLLRRLARRLPEPLASHPLRRLAQCPPEPLASHPLRRLAQRPPEP
LASHPLRRLALRHPLHLGALHQLLVHHQPQCLVPHRLPLAADHHCLDKSQALAVLVLLLASLVL
LEVHSSKHNQHLVAALLARQARRPLAPQLHHPLVPQLHQHSARPPQHLVQHLHLYSVLQVPQHL
VLQALVHPPLLVLDLQVLQPLVQVVLQDSELQALACQLVLLTLALLHLLVKQYLHSVALPLEQL
HLLLAHRHLHLDHRQQHQHLGKHHLGIKLEEPEYSLILKHQMRTVLQVVLSLLQN*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3339000-3340952(+)
Potential amino acid sequence	MSTGAFGQPSAPAFGSTSTGAFGQPSTQAFGTPSSSPFGSSTPAFGASPAPVFGATSSTFGSGS SLFGQKPSFGGFGSSPSQSSAFGGPFQQAQPAFGGSTFGAASTPTFGTTTTPSFGATTTPAFGT TTPAFGSTSTSVFGASSAPAFGSTGFGSSTTPGFGSSGTTAFGAGSTPGFGASSSGMSTSAFNF GSSPSFGQTIPTFGSTPFGTTSSTFGSQTSTFGSQTTAPAFGQTSFGNQAGGTRIQPYTQTPDA DSATSGTQPAAKLNSISAMEAYKAKSHEELRWQDYQRGDKGGPNPSGTPAVTPSFPSPVNNQFS PNPPNAFPSASANNPFAPKQPSTGFGSISSVFNSISSNTAPASSSPFAPTISNPFPTQTNCSQF VNSASSPSLFGTINQNSFSTSGTNSQSVGLFGPSPSIVQQPSQASSGFTSSFPSFSGSLFSPPT PVATGGLFGSGPSPSTHLGSRRLALLGRPQATHSGHRQADLARRTLPPPILLRRNPLAARSPHS GHRQEIHLLARRPPEPLASHLLRRLARRLPEPLASHPLRRLAQCPPEPLASHPLRRLAQRPPEP LASHPLRRLALRHPLHLGALHQLLVHHQPQCLVPHRLPLAADHHCLDKSQALAVLVLLLASLVL LEVHSSKHNQHLVAALLARQARRPLAPQLHHPLVPQLHQHSARPPQHLVQHLHLYSVLQVPQHL VLQALVHPPLLVLDLQVLQPLVQVVLQDSELQALACQLVLLTLALLHLLVKQYLHSVALPLEQL HLLLAHRHLHLDHRQQHQHLGKHHLGIKLEEPEYSLILKHQMRTVLQVVLSLLQN*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0165900_circ_g.2

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