Detail information of AT1G79550_circ_g.7


General Information
CircRNA Name AT1G79550_circ_g.7
ID in PlantcircBase ath_circ_011036
Alias At_ciR745
Organism Arabidpsis thaliana
Position chr1: 29925723-29926326  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ, CIRI-full
Parent gene AT1G79550
Parent gene annotation Phosphoglycerate kinase
Parent gene strand -
Alternative splicing AT1G79550_circ_g.1 AT1G79550_circ_g.2 AT1G79550_circ_g.3 AT1G79550_circ_g.4 AT1G79550_circ_g.5 AT1G79550_circ_g.6 AT1G79550_circ_g.8
Support reads 11
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G79550.1:2
AT1G79550.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCACGAACACACTCTTTCCCTTCAGATCCGCTTCCTTCAAAGTTCCAACGCTTCTCTTCGTC
GCCATAGTTGATTCTTCGTAAAACAAACTAAAAACActcaacaccaagaagttcagacaatctg
ggcacaagaggctttaagctgtacttaggagtaacaccttttgggcggccctgaaacataaatt
gagatcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 304
Transcript exons: 29925723-29925800,29926101-29926326
CTCAACACCAAGAAGTTCAGACAATCTGGGCACAAGAGGCTTTAAGCTGTACTTAGGAGTAACA
CCTTTTGGGCGGCCCAAGTGACTGCAGAGAACAACCCTAGATCCATTACCCATCAAGTACTTGA
TGGTGGGAACAGCGGCACGAATCCTGGTGTCATCGGTGATGTTAGAGTTATCATCCAAAGGAAC
GTTGAGATCAACCCTCACGAACACACTCTTTCCCTTCAGATCCGCTTCCTTCAAAGTTCCAACG
CTTCTCTTCGTCGCCATAGTTGATTCTTCGTAAAACAAACTAAAAACA

Genomic sequence CTCAACACCAAGAAGTTCAGACAATCTGGGCACAAGAGGCTTTAAGCTGTACTTAGGAGTAACA
CCTTTTGGGCGGCCCTGAAACATAAATTGAGATCAGATACATCCATTAATTCAACAGCATCATC
CAATTGAACTTGAGTATAAACATATCCAAGTAAACTTACTAAAACAATTACCCAAACAACACCA
GAAAATCAACCGATAGAGTCAATGAACATATTGAAAAACAAGAATACTATATCTACATCCTAAC
ATGCAAAGAGACTCTTCTTATACGCATGGCTCTCCGGATAAACAGATCAGATCAAAATTCCCAC
ACCAAAATTACAACAGATAAGCAAGTAGTGAAGTGAGAACTGAGATAAGATATCATACCAAGTG
ACTGCAGAGAACAACCCTAGATCCATTACCCATCAAGTACTTGATGGTGGGAACAGCGGCACGA
ATCCTGGTGTCATCGGTGATGTTAGAGTTATCATCCAAAGGAACGTTGAGATCAACCCTCACGA
ACACACTCTTTCCCTTCAGATCCGCTTCCTTCAAAGTTCCAACGCTTCTCTTCGTCGCCATAGT
TGATTCTTCGTAAAACAAACTAAAAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.262840542
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015