Detail information of Zm00001d014232_circ_g.1


General Information
CircRNA Name Zm00001d014232_circ_g.1
ID in PlantcircBase zma_circ_001941
Alias circ2088
Organism Zea mays
Position chr5: 37309798-37311307  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d014232
Parent gene annotation F-box/LRR-repeat protein 15
Parent gene strand -
Alternative splicing Zm00001d014232_circ_g.2
Support reads 10
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d014232_T009:3
Zm00001d014232_T006:3
Zm00001d014232_T029:3
Zm00001d014232_T016:3
Zm00001d014232_T023:3
Zm00001d014232_T031:3
Zm00001d014232_T012:3
Zm00001d014232_T036:3
Zm00001d014232_T035:3
Zm00001d014232_T025:3
Zm00001d014232_T005:3
Zm00001d014232_T003:3
Zm00001d014232_T010:3
Zm00001d014232_T021:3
Zm00001d014232_T019:3
Zm00001d014232_T015:3
Zm00001d014232_T001:3
Zm00001d014232_T004:3
Zm00001d014232_T030:3
Zm00001d014232_T017:3
Zm00001d014232_T028:3
Zm00001d014232_T027:3
Zm00001d014232_T007:3
Zm00001d014232_T008:3
Zm00001d014232_T011:3
Zm00001d014232_T013:3
Zm00001d014232_T002:3
Zm00001d014232_T024:3
Zm00001d014232_T014:3
Zm00001d014232_T022:3
Zm00001d014232_T020:3
Zm00001d014232_T018:3
Zm00001d014232_T026:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCACAACCCTTCAGCTCCATTATAGACATATTTGGGGCCTCAATGCACAGAATACTTAATTT
TGGACAAATTCCCAGATTTAGGGATTCAAGGCCCACcctcaagtttaacgttaaaagattggag
catgtcaaatccacttccttcaagttggttgaaagattaagattaattttggacaaatgtgaaa
agtttgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAGTTTAACGTTAAAAGATTGGAGCATGTCAAATCCACTTCCTTCAAGTTGGTTGAAAGA
TTAAGATTAATTTTGGACAAATGTGAAAAGTTTGCTATCAAAGGAATAACAACTTTCTTAATAT
TAGGGCACCCAGTACAATTGAGAACTTCAAGCAGACGGCCAGGTTGCTCACTGATCTCTTCATT
CTTGATTGGTGAACTAGGTGGACAAGAGTCAACTGGCATATCCACAGAACCGCTATCCCCAGAT
TCGCACACCAATTCTTGAAAATTTGTACATCCGTTGAAGTTCACATTAACCAAATTACTACAAC
AAGCAAGAAGACCTTCTATTGCATTCTGTTCGATGGGTGAGTAGGACAGATCTAGCTCAACAAG
CAATGGAAGAGCACCCTCTCTGTAAAGGGCATCCAATGATGAGTCACTGAGGTACTTGCAAGCT
GAAAGTTTTAACACCTGCCAAAGGAAAACCAGATACCATTACAACAGAATACATCAATAAACTC
CATTTTGTATGAACAAATCCATTATTATCTTAACATTCAAATTCCAAAATTGTTCCTTTTCAAT
TAATCACATGTGATAAAAAAACATCATATAAAAAACAAATGCTAATAAAGTGAACTCCAAAAGG
TAATTCAATGATCTTATACTCATTTTCTGTTTTTCCAGATCATACTACGTAAAATGGAAAACTA
TACCAAAACTTTAGGTGCCGTTTGGTTCACGAAATGTAACGTAAATGGTATCGATAATGATTCA
CATTCGAGTACCAGCGGTAATAAGTTTGAATAGGCCGGTATCAATTTCTAGTGTGGTATCTGAT
TACGGTTGGAGTTAAACAAACATGATTTAACGTTATCAGTTACCCATTTCGTTACAAATATGTG
AACCAACGGCACCTTAATAGCATTGCATACATCTACACATGAATAAACATTAGGCTGCATTATA
TATTTGCATAGAATAACAACTATTAAAATAAGGTTCCATCTTAATGTACCATACTCCAAAATTT
GCAACATAAGTGTTCCAAACACGAACACAGTCAAGCTTACCTTCAACTGTGGACAACTGTCAAA
AATAGGCTTCAAGTTGATCAAAAATGTATAAGACAGGTCAAGCAAGGTCAACTTATGAAGGCAA
TGCAATGAAGACAATCCATCGATGCCAATGGATAGGCATGATGACAGGATAAGATGTTCAATCA
GAGGACATGCCCCGGTCATACAAGTCAGTGAATCATCCACAAGCTGCCTGAACATGCAAAAACA
AAATGAACACAGCAATAGTAGGTAGCAATTGATGAAATAAAGCAAAAAATACTGAAAGTGTGGC
ACAACCTGCAGAAAGAGGCATCTAAAGATGTCAAGCGAGGGCAATTGATGGAAGCCTCGGAAAG
CACACCACAACCCTTCAGCTCCATTATAGACATATTTGGGGCCTCAATGCACAGAATACTTAAT
TTTGGACAAATTCCCAGATTTAGGGATTCAAGGCCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.02468016
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b