Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018362_circ_g.4 |
ID in PlantcircBase | zma_circ_008833 |
Alias | zma_circ_0002013 |
Organism | Zea mays |
Position | chr5: 219173314-219173634 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018362 |
Parent gene annotation |
Protein TSS |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d018362_T003:1 Zm00001d018362_T005:1 Zm00001d018362_T006:1 Zm00001d018362_T001:1 Zm00001d018362_T002:1 Zm00001d018362_T004:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.318610099 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
219173588-219173349(+) 219173559-219173431(+) 219173569-219173423(+) 219173585-219173316(-) 219173344-219173579(-) |
Potential amino acid sequence |
MYTQGLYMWKLIRKLNLMAETTENGIFS*(+) MCLNARTTISCIHKDCICGSLSESSTLWQRPRRMAYFLRSRQYSSFHFQPNLFIKKTSSHLFLR L*(+) MLELPSHVYTRTVYVEAYPKAQPYGRDHGEWHIFLDQDNIHLSTSNQISLSKRPPATFS*(+) MVVRAFKHIVRAVIAAVDDINDMADSVASCLNILLGPFLEENNDKDCGEDHNLRKRWLEVFLIK RFGWKWKDEYCLDLRKYAILRGLCHKVELSDKLPHIQSLCIHEMVVRAFKHIVRAVIAAVDDIN DMADSVASCLNILLGPFLEENNDKDCGEDHNLRKRWLEVFLIKRFGWKWKDEYCLDLRKYAILR GLCHKVELSDKLPHIQSLCIHEMVVRAFKHIVRAVIAAVDDINDMADSVASCLNILLGPFLEEN NDKDCGEDHNLRKRWLEVFLIKRFGWKWKDEYCLDLRKYAILRGLCHKVELSDKLPHIQSLCIH EMVVRAFKHIVRAVIAAVDDINDMADSVASCLNILLGPFLEENNDKDCGEDHNLRKRWLEVFLI KRFGWKWKDEYCLDLRKYAILRGLCHK(-) MPFSVVSAIRLSFRISFHIYSPCVYMRW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |