Detail information of Zm00001d028303_circ_g.1


General Information
CircRNA Name Zm00001d028303_circ_g.1
ID in PlantcircBase zma_circ_000573
Alias circ2507
Organism Zea mays
Position chr1: 29786974-29787389  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d028303
Parent gene annotation Branched-chain-amino-acid aminotransferase
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d028303_T002:2
Zm00001d028303_T001:2
Zm00001d028303_T003:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAGGCTCACCTGTCGGCGACGTGGTCCAGCTGCGGCAGCGACGACTGCCACCGGCGCGGGAG
CAGAAGGGAGCATCCGCCGCCGCCTCCTCCTCCGGCcctgggcgtagtttagaacgccggagga
ggggctgagctcgatgttgccgtagcggcagagctcgccgcgggggaagtcgccgcggtcctcc
ggcgagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGGCGTAGTTTAGAACGCCGGAGGAGGGGCTGAGCTCGATGTTGCCGTAGCGGCAGAGCTC
GCCGCGGGGGAAGTCGCCGCGGTCCTCCGGCGAGCACCGCGTGACGTACATGTAGTCGGTCGGG
GTGAGGCCGAAGCCGAGGTTGTCCCAGTCGATCTCGCCGCCGCTCTCCTCGTTGGACCTGCGTA
GTACGTTCACACGCATGCTGCATGATGCACGTTGCGGCCGGCAGACTTAAAAGATGGCGAAACA
ATGGGGGAGTCGGTCGGAGAATGCCCGATCGGGATCTGCGGCCGGGCGTACTGTCTGTCACTGA
GGCTCACCTGTCGGCGACGTGGTCCAGCTGCGGCAGCGACGACTGCCACCGGCGCGGGAGCAGA
AGGGAGCATCCGCCGCCGCCTCCTCCTCCGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.213834635
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b