Detail information of BGIOSGA016346_circ_g.1


General Information
CircRNA Name BGIOSGA016346_circ_g.1
ID in PlantcircBase osi_circ_014340
Alias Chr04:20776631_20777269(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18071291-18071929  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA016346
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA016346-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACACTTGTAAGAGTACCTTGTAACCATAATTCAGCACCATACAAAATGAATCATTGGATTTTC
TGAATTTTCTAATGATTTATCCACACGATTTCATCAggtagccaaacatggcacttctacccta
catgtattcaatgatcaaagtgtgattagcagctcgttttatacagtttcctgattaacattca
actgttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAGCCAAACATGGCACTTCTACCCTACATGTATTCAATGATCAAAGTGTGATTAGCAGCTCG
TTTTATACAGTTTCCTGATTAACATTCAACTGTTGTGAGCCCGTGTGAAGTGTTCAGGTCCTAA
ATAAGAGATACTGTACTAGACATTCCAAGAGTATGTCCTTGCGCCTGTTTTCTTGTGGTAATAC
GTAAGGCCATATATTTTGATGAGATCAAACGAAAATGGCCATTTAGACTGCATAAAGAAAGGCG
ACATAAATAATTTATATATACTATACTGAATTTCAGATTGAGATTCCTAGATGGTTATTGTATA
GTGCTTAACCTAATGCTCTGTGTAACACTTATAATTGCCTGCATCTGCTCTGGGGATTTAGTGG
CATATGAGAGAACTACGTGGTTCCTGCCTGATAGACTACAGGCAGGATCTTCCTAGGCCTCACA
ATCCACACGCGGTTGTCTGTTCCGATGAGTAGTACTTGTTCTTGTGCTTGACAGACCTATGAGT
CTATGAGTATCACCAGGAATAAGGCCAAACACTTGTAAGAGTACCTTGTAACCATAATTCAGCA
CCATACAAAATGAATCATTGGATTTTCTGAATTTTCTAATGATTTATCCACACGATTTCATCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021