Detail information of BGIOSGA005861_circ_g.1


General Information
CircRNA Name BGIOSGA005861_circ_g.1
ID in PlantcircBase osi_circ_012098
Alias Chr02:28593019_28593852(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 29100727-29101560  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA005861
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA005861_circ_g.2 BGIOSGA005861_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA005861-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCAAGCTCGCGACAGAAACTCCTAGCAGCATTATCTTGGACATGACGAGAAAAATTGATGCA
TGTCCAGTTGTTAACTCTACCACCATTGACCATTTTcagctgcaatggaagggctagaatcttc
tccaggatggggatgtgtaacatcagcaccaaaaatgatcgttggcctatcactcacaagggga
atcctcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTGCAATGGAAGGGCTAGAATCTTCTCCAGGATGGGGATGTGTAACATCAGCACCAAAAAT
GATCGTTGGCCTATCACTCACAAGGGGAATCCTCCTTGTCAAAGCATCAACAAGTACTGTATTT
CTTCCTCCCACCTATAAATTAAAGGAATATAAATTACTACAAAATAAAGGTAAAAAACTACAAA
ATCGGGCAAAAATAATTGGTAGAACATTTCCGAACCTTAACATTGATTTTAAGGGCAACGTTTG
CTAAATACTGTTTGCTCATCTTAAAAACATGCTTCGTAAGACAGCATTGCGAGACCAATCCAAG
ATCAGTCTCACATATCCTTTTGAGATCGCCTGAGGATTGACAAGCATATTAATAAAGACTTTTT
TATCAGATAACAATCAAGTGTTGTTTTGAAATAAAAAGGCATACCATAAAGAGAACCATTATTG
TCAGGCAATATTGCAATCAGCAGGTCAAGCTCCCCGCCCTGTGGTTTCAGTATATTCATGGCCT
CTTGATAGCGTGCCTTGAGCGCTCTTTCCACATGTTCAGGTCTTGCAGTCACTAGAGGAACCAC
AGGATCAATTGAGAAGTCCTACAACGAGAGGATATGAAGCATGTGAAAGGATGTTATGGTCCAA
GAATATACAGAGTCAAATAGCAACACTGAAAGAAATGTCTGGAGGCACCATTAGATGGAAGAAA
AACTTACCATCCCAGATATTTGGCACATAATAGCAAGCTCGCGACAGAAACTCCTAGCAGCATT
ATCTTGGACATGACGAGAAAAATTGATGCATGTCCAGTTGTTAACTCTACCACCATTGACCATT
TT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021