Detail information of Os02g0161200_circ_g.3


General Information
CircRNA Name Os02g0161200_circ_g.3
ID in PlantcircBase osa_circ_013211
Alias NA
Organism Oryza sativa
Position chr2: 3301691-3302732  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0161200
Parent gene annotation Zinc finger, CCCH-type domain containing protein. (Os02t0161200-
01)
Parent gene strand +
Alternative splicing Os02g0161200_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0161251-01:1
Os02t0161200-01:4
Os02t0161251-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAGTAAGGGGACTGAGGCAACCAAGTCTTTATATTTGAAGAAGAAATTATGGGAAGATGAA
AAAAGTAAGCTAGGAGCCAACATTTTCACAGAAAAGgtcattttggatgagaagatagatgaag
tgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatg
ccataggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 522
Transcript exons: 3301691-3301788,3301878-3301949,3302058-3302230,3302554-
3302732
GTCATTTTGGATGAGAAGATAGATGAAGTGCGCAAGATCTCTAGCAAAGTTAATGATCTTGAGG
TGCAGCTTAGAAGGGAGAAAGATGAATGCCATAGGATGACCTCAAAGATGAAGAAGTTTATTAA
AGCTCATGCTCGGTTTTTGAAGGCACAAGAAGAAGTGAAAAGGTCACAAGCTCGTTTCGAGAGG
CTTGGTGATTTGCTTGCTTCAGATATTTTGAAGCGTGGTGCTAATGAAGAGGGGTCCAGTGTCA
ATGAAGACCTAAACGAAAGGAGTCCTAATACTGCAGCAACTAAAAAGAGATCAATCCCATACTC
AACAAGTGAAGAAGCGAAAGCTGTGAAGAAGAGAAGAGAGCGAGACTCTGATACAATGACTAGG
TCAGATAAATATAGGTCAGATGTTACAGATTTTGATAAAACAAGTAAGGGGACTGAGGCAACCA
AGTCTTTATATTTGAAGAAGAAATTATGGGAAGATGAAAAAAGTAAGCTAGGAGCCAACATTTT
CACAGAAAAG

Genomic sequence GTCATTTTGGATGAGAAGATAGATGAAGTGCGCAAGATCTCTAGCAAAGTTAATGATCTTGAGG
TGCAGCTTAGAAGGGAGAAAGATGAATGCCATAGGTACTTAAGCAATGTTTCCACATGACAATG
GCACATTATCTTGACAGTATTATCCAATAGTTCTATATTGTTTTTCTATACCTTTGTAGGATGA
CCTCAAAGATGAAGAAGTTTATTAAAGCTCATGCTCGGTTTTTGAAGGCACAAGAAGAAGTGAA
AAGGTGCTTTATGTTTTCATCATGTTTGGCCTTGTAATGCTAGTACACACCAGATTACTCCTTT
TTGCATAACTATCAATCAATAAGTGTTCACCAATTGGAGTTATGCAGGTCACAAGCTCGTTTCG
AGAGGCTTGGTGATTTGCTTGCTTCAGATATTTTGAAGCGTGGTGCTAATGAAGAGGGGTCCAG
TGTCAATGAAGACCTAAACGAAAGGAGTCCTAATACTGCAGCAACTAAAAAGAGATCAATCCCA
TACTCAACAAGTGAAGAAGCGAAAGCTGGTATGTAGCTTAGTTTCTCGGGACACTCTGATTGCC
AGGTTGTGATTTGTACAATATGGATCTTGGTGTTATGCAGCATCCAACTTTCCCCTTCTGTTAA
ACTGATATATGTACCTCTTTATGGAGTAACCAGTCGATCCTAGTATGAAGTAGTTCAAATGTTC
CTTTATTTAATATTAAGCATTAAAATTGATGTGCTTAGTTTTCTTACAGTAGCACTGAAGGATG
CCTAGTTTCTTTTATAATTGGATTTTAATTCTTTCTGCAAATTGCTGAAGAAGTGTCTTAATTA
TGTACTTAAACCTAATTGCTTGTCTCCTCAGTGAAGAAGAGAAGAGAGCGAGACTCTGATACAA
TGACTAGGTCAGATAAATATAGGTCAGATGTTACAGATTTTGATAAAACAAGTAAGGGGACTGA
GGCAACCAAGTCTTTATATTTGAAGAAGAAATTATGGGAAGATGAAAAAAGTAAGCTAGGAGCC
AACATTTTCACAGAAAAG
Conservation Information
Conserved circRNAs osi_circ_003667*
PMCS 0.346660964
Functional Information
Coding potential Y
Potential coding position 3301880-3302729(+)
3301788-3302708(-)
3301697-3301913(-)
Potential amino acid sequence MTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTA
ATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWED
EKSKLGANIFTEKVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKA
QEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAV
KKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVILDE
KIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLL
ASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYR
SDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVILDEKIDEVRKISSKVNDLEVQ
LRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNE
DLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKS
LYLKKKLWEDEKSKLGANIFTEK(+)
MAFIFLPSKLHLKIINFARDLAHFIYLLIQNDLFCENVGS*(-)
MTFSVKMLAPSLLFSSSHNFFFKYKDLVASVPLLVLSKSVTSDLYLSDLVIVSESRSLLFFTAF
ASSLVEYGIDLFLVAAVLGLLSFRSSLTLDPSSLAPRFKISEASKSPSLSKRACDLFTSSCAFK
NRA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017