Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0161200_circ_g.3 |
ID in PlantcircBase | osa_circ_013211 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 3301691-3302732 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0161200 |
Parent gene annotation |
Zinc finger, CCCH-type domain containing protein. (Os02t0161200- 01) |
Parent gene strand | + |
Alternative splicing | Os02g0161200_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0161251-01:1 Os02t0161200-01:4 Os02t0161251-01:1 |
Conservation Information | |
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Conserved circRNAs | osi_circ_003667* |
PMCS | 0.346660964 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3301880-3302729(+) 3301788-3302708(-) 3301697-3301913(-) |
Potential amino acid sequence |
MTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTA ATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWED EKSKLGANIFTEKVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKA QEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAV KKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVILDE KIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLL ASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYR SDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVILDEKIDEVRKISSKVNDLEVQ LRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNE DLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKS LYLKKKLWEDEKSKLGANIFTEK(+) MAFIFLPSKLHLKIINFARDLAHFIYLLIQNDLFCENVGS*(-) MTFSVKMLAPSLLFSSSHNFFFKYKDLVASVPLLVLSKSVTSDLYLSDLVIVSESRSLLFFTAF ASSLVEYGIDLFLVAAVLGLLSFRSSLTLDPSSLAPRFKISEASKSPSLSKRACDLFTSSCAFK NRA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |