Detail information of Zm00001d047833_circ_g.1


General Information
CircRNA Name Zm00001d047833_circ_g.1
ID in PlantcircBase zma_circ_003023
Alias circ1413
Organism Zea mays
Position chr9: 142785940-142786393  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d047833
Parent gene annotation Serine/threonine-protein kinase ATG1c
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d047833_T006:2
Zm00001d047833_T005:3
Zm00001d047833_T007:2
Zm00001d047833_T008:3
Zm00001d047833_T002:3
Zm00001d047833_T010:1
Zm00001d047833_T004:3
Zm00001d047833_T001:3
Zm00001d047833_T009:3
Zm00001d047833_T003:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTGGATTCTGAATTTTCTGATTTTGCAAACAGAACATTCTTCTTGTTGAAAATAATGAAAA
TTCTCTGTTGAAGATCGCTGACTTTGGATTTGCAAAggaccatgggagcatatatctcatattg
gagtattgtcgaggtggtgacttacatgcataccttcaacgtcataaaagagtttctgaaaagg
ttgctagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACCATGGGAGCATATATCTCATATTGGAGTATTGTCGAGGTGGTGACTTACATGCATACCTT
CAACGTCATAAAAGAGTTTCTGAAAAGGTTGCTAGGCATTTCATCCGTCAGTTAGGCAAGTGAC
TCATCAATGGTCAGCCCCCTTATCCTCTGCCTTCCCCCTAGCTTTTCTCATAATGTCTCATTTT
TCTGGCAGCATCTGGTCTGCAAATGCTTCGCGATAATAACGTGGTTCACCGAGACCTAAAACCT
CAGGTTTGCTTACTCACTTTCTAGTTTCTGTTTCCATGATAGTTGAATATTCCATGGTCAAGTG
TTCAAGAAATATACAGTGGTTAAATTTATCTAATTTATTGGATTCTGAATTTTCTGATTTTGCA
AACAGAACATTCTTCTTGTTGAAAATAATGAAAATTCTCTGTTGAAGATCGCTGACTTTGGATT
TGCAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.078744493
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b