Detail information of BGIOSGA013004_circ_igg.1


General Information
CircRNA Name BGIOSGA013004_circ_igg.1
ID in PlantcircBase osi_circ_004923
Alias 3:23931685|23932287
Organism Oryza sativa ssp. indica
Position chr3: 23931685-23932287  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCCATGAAAGTAGAATCCCCAACCATAGCCATGCTAGACGGAAGGAACACTGCGATTTGCGA
CTTGTTTCGTCTCACGGCTTTTCAAAGCCTCTTCATcagcttctcgggatggctgagcgtggaa
tgcttccagagtttttcgccaagagatctcgctatggaaccccacttattggcatcatgttctc
cgcgtttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTTCTCGGGATGGCTGAGCGTGGAATGCTTCCAGAGTTTTTCGCCAAGAGATCTCGCTATG
GAACCCCACTTATTGGCATCATGTTCTCCGCGTTTGGTGTGGTCCTGCTGTCCTGGATGAGCTT
CCAGGAGATCATCGCTGCGGAGAACTACCTGTACTGCTTCGGTATGATCCTGGAATTCATCGCC
TTCATCAAGCTGAGGGTGGTCCACCCAAACGCCTCCCGACCTTACAAGATCCCACTGGGCACCA
TCGGCGCTGTCCTGATGATCATCCCACCTACCATTCTGATCGTCGTGGTGATGATGCTCGCGTC
CTTCAAGGTGATGGTGGTCAGCATCGTGGCGATGCTGGTTGGGTTCGTGCTGCAGCCGGCTCTG
GTGTACGTGGAGAAGAGACGGTGGCTGAAGTTCTCCATAAGCGCAGAACTGCCAGATTTGCCGT
ACTCGAACGTTGAGGAAGACAGCACAATCCCACTTGTGTGCTGACCTGCATATGCATGCCATGA
AAGTAGAATCCCCAACCATAGCCATGCTAGACGGAAGGAACACTGCGATTTGCGACTTGTTTCG
TCTCACGGCTTTTCAAAGCCTCTTCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021