Plant Circular RNA Database

Detail information of 3_circ_ig.12

			
						 General Information
					
						CircRNA Name
						3_circ_ig.12
					
						ID in PlantcircBase
						ath_circ_024191
					
						Alias
						3:10488628-10491156
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 10488628-10491156  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							3_circ_ig.13 3_circ_ig.14 3_circ_ig.15 3_circ_ig.16 						
					
						Support reads
						1/1/1
					
						Tissues
						seedling;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	3_circ_ig.12
ID in PlantcircBase	ath_circ_024191
Alias	3:10488628-10491156
Organism	Arabidpsis thaliana
Position	chr3: 10488628-10491156 JBrowse»
Reference genome	TAIR10.38
Type	ig-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	3_circ_ig.13 3_circ_ig.14 3_circ_ig.15 3_circ_ig.16
Support reads	1/1/1
Tissues	seedling;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTACTTTACCTCCTGCTCCAGCTTGAATAGATGACGATTGAAGTGCTGCTGCAATCTCTCATT
TGCATAATTTATACAATACTGCTCAAAACTATTTCTcaccatgttctcctttataaagcaagaa
atgtttggaactcccacgtcttcgagaatatgattccatactgatatcttgtgcgcctctataa
gtgttgag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CACCATGTTCTCCTTTATAAAGCAAGAAATGTTTGGAACTCCCACGTCTTCGAGAATATGATTC
CATACTGATATCTTGTGCGCCTCTATAAGTGTTGAGCTCTAAAAAATAGATGCCTAATTTTTTT
TACCAACAAATCAGAATAAGTGAATACTCAGCCACCAAATATCATTATTTCTAATCTGTTACAA
ATTGAATTCAGAAGAAAATATGTTAAGAGACAGAAGAAACTTACTGGTTTTGCTTCAAGGTACC
ATTAGAAGTGGATTATGAAATCTTTGAAACACCTTTTGATGATTCGATTCAAATCGTTAGCAAG
AGCATGAACATAAAAGGGAAGAGAGAGGAGAGAACATGTTAATGAGAAAACCAGATCATGGAGC
TTGGAGAGGTACCTTGAACAAATCATGGTCTTACTTTTCAAGCACAAGAGCTAGTTATGGGCCT
TTGGATATCTTTGATATTCTTTTCCATCTGAGAAAAATGCACACGACTACCAATATTAGGTTCT
AACAACGAATAGAACAAGCTAATCCAAGTATACCTATTGTTTCTGGTCAACTGACTCTCAAGAT
CTCGAAAAGGCATCCTTCAGCTGTTTTTCGCACATCTTCTGATTTTTTCTGGAAATATTCATGG
AAACATAACATATTAGAATCATTACAAGCAGACGTATTCACTGATTTAAGCTAATGGACTCACC
ATCACTGCGGTTACATGCAGGTTTTGTCAACCAATCAAAAAGATCTTTACACACCACTGTTAGG
AGTATTAAAATCTGCGCATTAACAGGGTAAAAAAGACATGCCTAAAGAAGTTCACCAAACCATT
TTGTAAAGAGCAGCAGCCAAGGTACATTCTCCCATGTGCTTCATGTTGTTAGTGAGGCATTTTA
GAACGTCGGACAATATTTCCTAAAGTAGATCACTCAGGTATTTAGTAAAACTAGTAGGAGTGAT
ATTTTACAATGTAAAAAGTATTTTCAAAGCTTGACATGTATCCCTAACCTTGCTCGCCTCCTCC
ACAGCTGGTCCCATGGCTGCTACAACACCCCAATTGTAGTCAATGTTGCATCACAAGACTAAAA
GTCGTGCTCGTGGAGCACCAAATAATTCTCCTACCGAACGTGACAAGAATATAACAGATAACAA
TAAGTATTCATGAATAATTTTGTAAAGAAAAAGCTAAAATAAGAGAGAATTATATAAAAACATT
CCTGACTTCATACCAGTTCTAGTTGGTTGGATACATTTATTTTAGCTCTTCCAGAATTTATTTA
CAGCTTCCATTGAATCCAAACGCATCTACAAAAAATTTAAAAATTCAGTTTCAACTCTATAGCT
TAGAATAATTTCCACAAAAGAATTGTTAGGTTAAGACAACCAAGAAGATTTCCAATTTGTACAG
CACCTTCAAGTATGACTCTCTCAAAGTCCTTTACTGATAACTTCTCTAGGTAAGCTATTCGGAC
ATCTAGCAGAGGTTGATGTTGAAAACGACGTCTTACTAACTCACTTTGGAGTCGCAGTCCCCTG
ATGAACAGAATACAAGTACAACAAGAAATAGAAATCCAAAAAACAATTCACACAAATGAACCTT
AATAGTTCACATTTGACATCATTAAGAAACTATTTGATGCCTGCAAACAGAAATAGCACAGTTT
GATTCAGTTATCTAGATATGTTTCTTCTAACAACAAATGTTAGACAAAGCAGAAGCAACTTAAA
GGAATTCGTAGCCACCTGGACCATCAAATTTGTTGCAAAGCAGAGGTTGATGTTGAAAACGACG
TCTTACTAACTCACTTTGGAGCCGCAGTCCCCTGATGAACAGAATACAAGTACAACAAGAAATA
GAAATCCAAAAAACAATTCACACAAATGAACCTTTATAGTTCACATTTGACATCATTAAGAAAC
TATTTGATGCCTGCAAACAGAAATAGCACAGTTTGATTCAGTTATCTAGATATGTTTCTTCTAA
CAACACATGTTAGCCAAAGCAGAAGCAACTTAAAGGAATTCGTAGCCACCTGGACCAACAAATT
TGTTGCAAAGCATGCAAAAGTGTGATTGTAGCATTTCTAATGACTGCAGCCCAACCATCCTTAC
AAAAATCTATCATATCCTGTCAAATGGACAAAAAGAAACAAGATATTCCACTTTAGTAAATAGG
GAAATCAGGGGCTGAAAATTACAAAAGTAGAATTTAGTTCAAAAGTGAGACAGCAAAGTCATCA
ACTGCTGGAACCATCCATAACAATCCTTCACTAAGAACCTTGGAATTCTGGAGTTCTTGTGCTC
TTTCATGATTTTGCAAAGCTACAAACAAAAGGCATATATCATCAGATTAAAGTGAAAGTCGATA
GAAAATTTACCGAACCACATACTTTGCCTAGGTATACTACAAGAACACATAGCAGGAATGGATT
ACTTTACCTCCTGCTCCAGCTTGAATAGATGACGATTGAAGTGCTGCTGCAATCTCTCATTTGC
ATAATTTATACAATACTGCTCAAAACTATTTCT
						
					

			
		

Sequences
Splice junction sequence	ATTACTTTACCTCCTGCTCCAGCTTGAATAGATGACGATTGAAGTGCTGCTGCAATCTCTCATT TGCATAATTTATACAATACTGCTCAAAACTATTTCTcaccatgttctcctttataaagcaagaa atgtttggaactcccacgtcttcgagaatatgattccatactgatatcttgtgcgcctctataa gtgttgag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CACCATGTTCTCCTTTATAAAGCAAGAAATGTTTGGAACTCCCACGTCTTCGAGAATATGATTC CATACTGATATCTTGTGCGCCTCTATAAGTGTTGAGCTCTAAAAAATAGATGCCTAATTTTTTT TACCAACAAATCAGAATAAGTGAATACTCAGCCACCAAATATCATTATTTCTAATCTGTTACAA ATTGAATTCAGAAGAAAATATGTTAAGAGACAGAAGAAACTTACTGGTTTTGCTTCAAGGTACC ATTAGAAGTGGATTATGAAATCTTTGAAACACCTTTTGATGATTCGATTCAAATCGTTAGCAAG AGCATGAACATAAAAGGGAAGAGAGAGGAGAGAACATGTTAATGAGAAAACCAGATCATGGAGC TTGGAGAGGTACCTTGAACAAATCATGGTCTTACTTTTCAAGCACAAGAGCTAGTTATGGGCCT TTGGATATCTTTGATATTCTTTTCCATCTGAGAAAAATGCACACGACTACCAATATTAGGTTCT AACAACGAATAGAACAAGCTAATCCAAGTATACCTATTGTTTCTGGTCAACTGACTCTCAAGAT CTCGAAAAGGCATCCTTCAGCTGTTTTTCGCACATCTTCTGATTTTTTCTGGAAATATTCATGG AAACATAACATATTAGAATCATTACAAGCAGACGTATTCACTGATTTAAGCTAATGGACTCACC ATCACTGCGGTTACATGCAGGTTTTGTCAACCAATCAAAAAGATCTTTACACACCACTGTTAGG AGTATTAAAATCTGCGCATTAACAGGGTAAAAAAGACATGCCTAAAGAAGTTCACCAAACCATT TTGTAAAGAGCAGCAGCCAAGGTACATTCTCCCATGTGCTTCATGTTGTTAGTGAGGCATTTTA GAACGTCGGACAATATTTCCTAAAGTAGATCACTCAGGTATTTAGTAAAACTAGTAGGAGTGAT ATTTTACAATGTAAAAAGTATTTTCAAAGCTTGACATGTATCCCTAACCTTGCTCGCCTCCTCC ACAGCTGGTCCCATGGCTGCTACAACACCCCAATTGTAGTCAATGTTGCATCACAAGACTAAAA GTCGTGCTCGTGGAGCACCAAATAATTCTCCTACCGAACGTGACAAGAATATAACAGATAACAA TAAGTATTCATGAATAATTTTGTAAAGAAAAAGCTAAAATAAGAGAGAATTATATAAAAACATT CCTGACTTCATACCAGTTCTAGTTGGTTGGATACATTTATTTTAGCTCTTCCAGAATTTATTTA CAGCTTCCATTGAATCCAAACGCATCTACAAAAAATTTAAAAATTCAGTTTCAACTCTATAGCT TAGAATAATTTCCACAAAAGAATTGTTAGGTTAAGACAACCAAGAAGATTTCCAATTTGTACAG CACCTTCAAGTATGACTCTCTCAAAGTCCTTTACTGATAACTTCTCTAGGTAAGCTATTCGGAC ATCTAGCAGAGGTTGATGTTGAAAACGACGTCTTACTAACTCACTTTGGAGTCGCAGTCCCCTG ATGAACAGAATACAAGTACAACAAGAAATAGAAATCCAAAAAACAATTCACACAAATGAACCTT AATAGTTCACATTTGACATCATTAAGAAACTATTTGATGCCTGCAAACAGAAATAGCACAGTTT GATTCAGTTATCTAGATATGTTTCTTCTAACAACAAATGTTAGACAAAGCAGAAGCAACTTAAA GGAATTCGTAGCCACCTGGACCATCAAATTTGTTGCAAAGCAGAGGTTGATGTTGAAAACGACG TCTTACTAACTCACTTTGGAGCCGCAGTCCCCTGATGAACAGAATACAAGTACAACAAGAAATA GAAATCCAAAAAACAATTCACACAAATGAACCTTTATAGTTCACATTTGACATCATTAAGAAAC TATTTGATGCCTGCAAACAGAAATAGCACAGTTTGATTCAGTTATCTAGATATGTTTCTTCTAA CAACACATGTTAGCCAAAGCAGAAGCAACTTAAAGGAATTCGTAGCCACCTGGACCAACAAATT TGTTGCAAAGCATGCAAAAGTGTGATTGTAGCATTTCTAATGACTGCAGCCCAACCATCCTTAC AAAAATCTATCATATCCTGTCAAATGGACAAAAAGAAACAAGATATTCCACTTTAGTAAATAGG GAAATCAGGGGCTGAAAATTACAAAAGTAGAATTTAGTTCAAAAGTGAGACAGCAAAGTCATCA ACTGCTGGAACCATCCATAACAATCCTTCACTAAGAACCTTGGAATTCTGGAGTTCTTGTGCTC TTTCATGATTTTGCAAAGCTACAAACAAAAGGCATATATCATCAGATTAAAGTGAAAGTCGATA GAAAATTTACCGAACCACATACTTTGCCTAGGTATACTACAAGAACACATAGCAGGAATGGATT ACTTTACCTCCTGCTCCAGCTTGAATAGATGACGATTGAAGTGCTGCTGCAATCTCTCATTTGC ATAATTTATACAATACTGCTCAAAACTATTTCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.223102577

Conservation Information
Conserved circRNAs	NA
PMCS	0.223102577

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 3_circ_ig.12

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