Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17130_circ_g.4 |
ID in PlantcircBase | ath_circ_003013 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5854886-5855480 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G17130 |
Parent gene annotation |
Family of unknown function (DUF572) |
Parent gene strand | + |
Alternative splicing | AT1G17130_circ_g.3 |
Support reads | 4 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17130.1:3 AT1G17130.2:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.185808698 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5854952-5855477(+) |
Potential amino acid sequence |
MKTDPQNSDYIVESGASRNYEPWRAEDEEVDKDKQKRDAEEMGDAMKSLENRTLDSKREMDIIA ALDEMKSMKSRHATVSVDAMLEALQRTGAEKTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYI VESGASRNYEPWRAEDEEVDKDKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSR HATVSVDAMLEALQRTGAEKTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEP WRAEDEEVDKDKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLE ALQRTGAEKTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRAEDEEVDKD KQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTGAEK(+ ) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |