Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d036475_circ_g.1 |
ID in PlantcircBase | zma_circ_008962 |
Alias | zma_circ_0002514 |
Organism | Zea mays |
Position | chr6: 89540873-89542952 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d036475 |
Parent gene annotation |
ABC1 family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d036475_T008:8 Zm00001d036475_T009:8 Zm00001d036475_T003:8 Zm00001d036475_T006:8 Zm00001d036475_T004:8 Zm00001d036475_T005:8 Zm00001d036475_T001:8 Zm00001d036475_T002:8 Zm00001d036475_T007:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.126805308 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
89540910-89542949(+) |
Potential amino acid sequence |
MGLKLRVDMPQQAMDIATVFFRQSTTASEAKENIKTLNDQRERNVKALQEKMKLNKKEVQRFNP VDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAESTLLGSLTHGQIPNSQWIFDSPAN SDVESKLRNYLLELGSDKILGIQVCAYKDGKVIIDTAAGMLGKYDPRPVQPDSLFPVFSVTKGI TAGMVHWLVDKGKLKYEETVANIWPNFGTNGKELIKVHHLLNHTSGLHNALGDVVKNDPLLVCD WEETLNQITKSTPETEPGSAQIYHYLSFGWLCGGVIEGDHVALLSAFSEMGLKLRVDMPQQAMD IATVFFRQSTTASEAKENIKTLNDQRERNVKALQEKMKLNKKEVQRFNPVDAFPGDAIIFMRVL NLLRGLSASLNVRIVYLDIMRPFAESTLLGSLTHGQIPNSQWIFDSPANSDVESKLRNYLLELG SDKILGIQVCAYKDGKVIIDTAAGMLGKYDPRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLK YEETVANIWPNFGTNGKELIKVHHLLNHTSGLHNALGDVVKNDPLLVCDWEETLNQITKSTPET EPGSAQIYHYLSFGWLCGGVIEGDHVALLSAFSEMGLKLRVDMPQQAMDIATVFFRQSTTASEA KENIKTLNDQRERNVKALQEKMKLNKKEVQRFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIV YLDIMRPFAESTLLGSLTHGQIPNSQWIFDSPANSDVESKLRNYLLELGSDKILGIQVCAYKDG KVIIDTAAGMLGKYDPRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLKYEETVANIWPNFGTN GKELIKVHHLLNHTSGLHNALGDVVKNDPLLVCDWEETLNQITKSTPETEPGSAQIYHYLSFGW LCGGVIEGDHVALLSAFSEMGLKLRVDMPQQAMDIATVFFRQSTTASEAKENIKTLNDQRERNV KALQEKMKLNKKEVQRFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAESTLLG SLTHGQIPNSQWIFDSPANSDVESKLRNYLLELGSDKILGIQVCAYKDGKVIIDTAAGMLGKYD PRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLKYEETVANIWPNFGTNGKELIKVHHLLNHTS GLHNALGDVVKNDPLLVCDWEETLNQITKSTPETEPGSAQIYHYLSFGWLCGGVIE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |