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circRNA ID
AT1G01560_circ_g.1
Alias
ath_circ_000079, 1:202782-203128
Organism
Arabidpsis thaliana
Position
chr1: 202782-203128  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
Mitogen-activated protein kinase 11
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
AGACAACTTCAATGATGTTCACATTGTCTATGAGTTAATGGACACTGATCTTCACCACATTATC
CGCTCTAACCAACCGTTAACTGATGATCATTCACGGtgctgcatggaattcggagacgggtgag
gaagtagcgatcaagaagattggtaatgcatttggcaacattatcgacgctaagagaactttga
gagagatt
Support reads
1/2
Tissues
root;leaf
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TGCTGCATGGAATTCGGAGACGGGTGAGGAAGTAGCGATCAAGAAGATTGGTAATGCATTTGGC
AACATTATCGACGCTAAGAGAACTTTGAGAGAGATTAAGCTTCTTAAGCATATGGATCATGACA
ATGTAAGCTTTTGTCTTATTTTATTTATTATTCTCCACATGTTTTCTAGTAATTATCCTGATTC
TGGAGTTTATCTCACAGGTCATTGCCATTATAGACATAATAAGACCACCTCAGCCAGACAACTT
CAATGATGTTCACATTGTCTATGAGTTAATGGACACTGATCTTCACCACATTATCCGCTCTAAC
CAACCGTTAACTGATGATCATTCACGG
Number of exons covered
AT1G01560.3:2
AT1G01560.4:2
AT1G01560.2:2
AT1G01560.1:2
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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