Detail information of Os01g0948100_circ_g.1


General Information
CircRNA Name Os01g0948100_circ_g.1
ID in PlantcircBase osa_circ_005810
Alias NA
Organism Oryza sativa
Position chr1: 41692027-41695306  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0948100
Parent gene annotation Restriction endonuclease, type II-like, core domain containing p
rotein. (Os01t0948100-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0948100-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGACAATTCTATACTAGCCATGCCACCTCGGCGATCCAGTAAAAATTTTCTTGAAGATTATGA
AGTTGTGTTGATATTGGATGATCGTGAAAATTTTGGgggcgttgggaaatgggtcataaggcaa
ctgaaaggatcctttccagagtctagtccagatttatctcccccggaaagtaatgcagcaggag
aaaagggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCGTTGGGAAATGGGTCATAAGGCAACTGAAAGGATCCTTTCCAGAGTCTAGTCCAGATTTA
TCTCCCCCGGAAAGTAATGCAGCAGGAGAAAAGGGTAACTGTTTTTATGATTGATTGCATGCCT
ACCGAACATCTCTTTTAGGGTACCCTTATCCTTTCTTGTGGGAAGGGTTTTTTAAGTTAATCTG
CTGTGGTGAGAATGAAGATCACTATTATTTCTATAGGGAAGAAAGCAGGAGGGTCAAAGCGTTA
TGTGCCACAGAAGAATTCTGCTGCTTACGCGATACTGATCACGCTCCATAGGTATGCTTTGCTT
GGGGATATATTTTTCATTATTTTTGCTGTTCATCAAATGAAAGTGTTTTCTATCTCTTGGCAAA
CAATGATATATAACCATAGGAATTAGAACAGGTTCCTACTTGTAACCAGACAGTAACAGTTGAT
TTTCCTTCTAGGGAAACAATCAATGGGAAGAGTCATATGAAGAAGCAAGAGCTTATTGACGCCA
CTGAAGCAAGTGGCCTGTCACGAAGTGCAATTGGGTACAGTTTTCACAGTATACTCGCAATGTT
GCTCATTCCTGCTGCTATTTTCAGTGCATTACTAAGTAGGTAATTTGCATTATGAACAGTCCAG
ACAAAAGTAAAGCAAAACCAGGGGCTTTTGCAAGTTCTCAGAAGGACTGGTACACTGGATGGAG
CTGCATGAAAACATTGACATCTAAAGGACTGGTTGCAAAGTCCGGTAACCCTGCAAAGTAATTT
CATCAAACTTATCTTCCATGTCTATGTTAACTTTTCCGCTCTGTTACTTTAGATGAAAAATGTT
TGGTTCCTACAGTTGCAAAAAGGTTGACTGTTGTCAGTGGCAGTGCCACATTCTTGAGTATGGA
ATCTATACACCCACTCACAGTTATTTCTTTTGTGAGAAAGCTCCTACCTATCTAAAATTCCACA
CATAATCTTAAGATAAAAATTTTATGTGAATCAGCACCAAAGGTTTTTGTACGTGTATTAGATC
ATATGTACTAATTCTGTCTTTACTACTAGCTTTTCTGATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATTCAACAGAGCATCACTGCTAA
GGGCTAGCTATTAATTGTGCATCTTTTTAAAAGAGCTTCATTAAGTTATAATATGGAAATCAAA
TGAACTGAGTCATGAACACTTGTATTCATAAACTTGGTTACTTTTATCAAAATGTTCATGGGGC
TATTGTTTATAGTACTAGTGATTTGCATCATTGGTTATTTGAGGTTTGGGATAAGTTTAGCATC
ACGAGACACAAAAGCTAGGAAATTTGACATGATGCCACCTTAAGATCCCTGCAGATGATTGGCA
GTTTTTTTTATGTCCACTATCTCCATGCACTTTATGGAATATATTGTTTTCTGATATTTTGAGC
TAATTTTGAAAGGACACACTTTTAGATTTAAGGATGCAGTTATTCTGTGGCATAGCAACAACTC
TCTATCGATGAATAGAGGCAGAGTGGGAGACATGGCCAATTGTGAGCTTCTTTTGACCTGTTAG
TCTACAATGTGAAGCAACATGTACCTACTGATCTTCCACTTGGGATCATGATACAGAGACCTAT
CATTTGTTTGTCGCATAAACTGTAACCCACGTCTTGATCTCTAGTATTACTTTAATCCATTTGT
TTTCATTTGTGTGATGGGAGAACTGAGTCTATTAAGTTTACATGCATGCATCTTGTTGGGACTA
TATTATTAAGCAATATGTACTTTTTTGAGGTGCTAAGCATAACTAGGGGCTTAACAAATGAATT
TCTGTAGGTATATGATAACTGAAGAAGGGAAATCGACTGCTCTTGAATGTCTCTCAAGGTCTGG
GTTAGATGATCATGCAGCACCTTTGGTGATAAACAGTGCTCCCGACACATCTAATGCAAGTCAT
AAGTTGAATAATATTTGCATGACTTCTTTTGTTGAGACATCATCCGGACCTTCTAGGGCAATTG
GTAGACCCAAAACATCTATTGCCAACCCTGCCACTAAGACATCACCAGAAGTGACATATTTGAC
AAGTCAAGAATCACTCAATTACAACTCTGATGTTAGAACTGCTGTAAGTTCTACCTTTACTAAC
ATTGCTTTAGAAGCTATTTTTCCCAAGCTAAGAATGTGACAAAAGATCCATTGGTCTGGTTCTA
TTGTATTATATAGTTTTTCTTCTGATCAAGTTCTTCAATTTAATGATCACAATATTCAATCTTA
GCTTCTGGTTCAGCTGTTTCAGCATAAGCAGAACTGCCATTATTTTTGTATCTCAATAAAGCAA
AGCCTTTTTGTAGCTTTGCGATGTTGTTGCTGTCTAATAGTGCTACAATTTGGTGAAGTCCAAT
CAGGCACTTTTCCTTTTTAGGTTTTACGTGGTTTGGGTTGTAATTAGTGTACATAATTCTGAAT
TACAGGCTAGGCTTTCGGCCATAGTTCCATACTTTTCTGTCATACTAGAATTTTAGATGCTGTA
GTATAACTCATAGATTCTCTTATCTTTTTTAGGAGAACTGTGCTGAAGAAATCATTCTTAGTGA
CTCAGATTCTGAAGAATTATATACAGAGAACTATCCTCTAATAGGTAAAATTGTTATTTCGAGC
TCACAAACAATTTGTTATATTCCTTCTGCGCTAAAATAAATTTTGGTTTCCTAAGTGCAGGTTC
TGAAGAATTTACTGAGAGGGTTGCCCCTCCAATATTGAATGCAAGCAACTCTGGTTGTCTATCA
ATCTTATGTTTTCTATTAGAATAATATTGCATCCAATAAAAGTATTATTTTTACTGGCCTTTTC
AATTAATCCCAATAACCTTTTTTTTCCAGGCAAGACTACTACAAATTACAGATTCTCAGACTGT
TCAGCTTCTATTTCTCCTCGTTCGTCTGAAGGAACATTTGAGATGCAGTCTTCTAGTACAATGG
TAACCTGACCTTTTGTGGTTAAATCCCTAATCCCTAATCCCTATTCTGTAACTTATTCCCTTTT
GAAGTTGAAGATGCTGATTACTCAAAGAAATGACGGTACTGCTATTACATCTTTTCAACTACCA
GGGTATTGCTGAATTCAATATGCTGGACAATGATACTGTATGTATGGACAATTCTATACTAGCC
ATGCCACCTCGGCGATCCAGTAAAAATTTTCTTGAAGATTATGAAGTTGTGTTGATATTGGATG
ATCGTGAAAATTTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.107836916
Functional Information
Coding potential Y
Potential coding position 41692512-41695303(+)
41692049-41695267(-)
Potential amino acid sequence MKKQELIDATEASGLSRSAIGPDKSKAKPGAFASSQKDWYTGWSCMKTLTSKGLVAKSGNPAKY
MITEEGKSTALECLSRSGLDDHAAPLVINSAPDTSNASHKLNNICMTSFVETSSGPSRAIGRPK
TSIANPATKTSPEVTYLTSQESLNYNSDVRTAENCAEEIILSDSDSEELYTENYPLIGSEEFTE
RVAPPILNASNSGKTTTNYRFSDCSASISPRSSEGTFEMQSSSTMGIAEFNMLDNDTVCMDNSI
LAMPPRRSSKNFLEDYEVVLILDDRENFGGVGKWVIRQLKGSFPESSPDLSPPESNAAGEKGKK
AGGSKRYVPQKNSAAYAILITLHRETINGKSHMKKQELIDATEASGLSRSAIGPDKSKAKPGAF
ASSQKDWYTGWSCMKTLTSKGLVAKSGNPAKYMITEEGKSTALECLSRSGLDDHAAPLVINSAP
DTSNASHKLNNICMTSFVETSSGPSRAIGRPKTSIANPATKTSPEVTYLTSQESLNYNSDVRTA
ENCAEEIILSDSDSEELYTENYPLIGSEEFTERVAPPILNASNSGKTTTNYRFSDCSASISPRS
SEGTFEMQSSSTMGIAEFNMLDNDTVCMDNSILAMPPRRSSKNFLEDYEVVLILDDRENFGGVG
KWVIRQLKGSFPESSPDLSPPESNAAGEKGKKAGGSKRYVPQKNSAAYAILITLHRETINGKSH
MKKQELIDATEASGLSRSAIGPDKSKAKPGAFASSQKDWYTGWSCMKTLTSKGLVAKSGNPAKY
MITEEGKSTALECLSRSGLDDHAAPLVINSAPDTSNASHKLNNICMTSFVETSSGPSRAIGRPK
TSIANPATKTSPEVTYLTSQESLNYNSDVRTAENCAEEIILSDSDSEELYTENYPLIGSEEFTE
RVAPPILNASNSGKTTTNYRFSDCSASISPRSSEGTFEMQSSSTMGIAEFNMLDNDTVCMDNSI
LAMPPRRSSKNFLEDYEVVLILDDRENFGGVGKWVIRQLKGSFPESSPDLSPPESNAAGEKGKK
AGGSKRYVPQKNSAAYAILITLHRETINGKSHMKKQELIDATEASGLSRSAIGPDKSKAKPGAF
ASSQKDWYTGWSCMKTLTSKGLVAKSGNPAKYMITEEGKSTALECLSRSGLDDHAAPLVINSAP
DTSNASHKLNNICMTSFVETSSGPSRAIGRPKTSIANPATKTSPEVTYLTSQESLNYNSDVRTA
ENCAEEIILSDSDSEELYTENYPLIGSEEFTERVAPPILNASNSGKTTTNYRFSDCSASISPRS
SEGTFEMQSSSTMGIAEFNMLDNDTVCMDNSILAMPPRRSSKNFLEDYEVVLILDDRENF(+)
MTHFPTPPKFSRSSNINTTS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017