Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G22620_circ_g.5 |
ID in PlantcircBase | ath_circ_003918 |
Alias | Ath_circ_FC0480 |
Organism | Arabidpsis thaliana |
Position | chr1: 8000651-8001883 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G22620 |
Parent gene annotation |
ATSAC1 |
Parent gene strand | - |
Alternative splicing | AT1G22620_circ_g.3 AT1G22620_circ_g.4 AT1G22620_circ_g.6 |
Support reads | 8 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G22620.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.255139477 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8001817-8000653(-) |
Potential amino acid sequence |
MQSLQKNVLSSGEEGMPYDNIFVWNSYLTQPIRSRCNNTIWTLALVHGHFKQIRLSIYGRDFSV TLVSRRSRHFAGTRYLKRGVNDRGRVANDVETEQLVLDDEAGSCKGKMSSVVQMRGSIPLFWSQ EASRFSPKPDIFLQRYDPTYESTKMHFEDLVNRYGNPIIVLNLIKTVEKRPREMVLRREFANAV GYLNSIFREENHLKFIHWDFHKFAKRYKKLLSSVDLTKDFFYSYTYPIMQSLQKNVLSSGEEGM PYDNIFVWNSYLTQPIRSRCNNTIWTLALVHGHFKQIRLSIYGRDFSVTLVSRRSRHFAGTRYL KRGVNDRGRVANDVETEQLVLDDEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIFLQRY DPTYESTKMHFEDLVNRYGNPIIVLNLIKTVEKRPREMVLRREFANAVGYLNSIFREENHLKFI HWDFHKFAKRYKKLLSSVDLTKDFFYSYTYPIMQSLQKNVLSSGEEGMPYDNIFVWNSYLTQPI RSRCNNTIWTLALVHGHFKQIRLSIYGRDFSVTLVSRRSRHFAGTRYLKRGVNDRGRVANDVET EQLVLDDEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIFLQRYDPTYESTKMHFEDLVN RYGNPIIVLNLIKTVEKRPREMVLRREFANAVGYLNSIFREENHLKFIHWDFHKFAKRYKKLLS SVDLTKDFFYSYTYPIMQSLQKNVLSSGEEGMPYDNIFVWNSYLTQPIRSRCNNTIWTLALVHG HFKQIRLSIYGRDFSVTLVSRRSRHFAGTRYLKRGVNDRGRVANDVETEQLVLDDEAGSCKGKM SSVVQMRGSIPLFWSQEASRFSPKPDIFLQRYDPTYESTKMHFEDLVNRYGNPIIVLNLIKTVE KRPREMVLRREFANAVGYLNSIFREENHLKFIHWDFHKFAK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |