Detail information of Os04g0474800_circ_g.14


General Information
CircRNA Name Os04g0474800_circ_g.14
ID in PlantcircBase osa_circ_024205
Alias NA
Organism Oryza sativa
Position chr4: 23752385-23752575  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0474800
Parent gene annotation Similar to OSIGBa0135C13.7 protein. (Os04t0474800-01);Similar to
Isoform 2 of Beta-glucosidase 12. (Os04t0474800-02);Similar to
OSIGBa0135C13.7 protein. (Os04t0474800-03)
Parent gene strand -
Alternative splicing Os04g0474300_circ_ag.1 Os04g0474300_circ_ag.2 Os04g0474300_circ_ag.3 Os04g0474300_circ_ag.4 Os04g0474300_circ_ag.5 Os04g0474300_circ_ag.6 Os04g0474300_circ_ag.7 Os04g0474300_circ_ag.8 Os04g0474300_circ_ag.9 EPlOSAG00000016679_circ_ig.1 Os04g0474500_circ_ag.1 Os04g0474500_circ_ag.2 Os04g0474500_circ_ag.3 Os04g0474500_circ_g.1 Os04g0474500_circ_ag.2 Os04g0474500_circ_g.3 Os04g0474500_circ_ag.4 Os04g0474500_circ_ag.5 Os04g0474500_circ_ag.6 Os04g0474550_circ_ag.1 Os04g0474700_circ_g.1 Os04g0474800_circ_ag.1 Os04g0474800_circ_g.1 Os04g0474800_circ_ag.2 Os04g0474800_circ_g.3 Os04g0474800_circ_ag.4 Os04g0474800_circ_g.5 Os04g0474800_circ_g.6 Os04g0474800_circ_ag.7 Os04g0474800_circ_g.8 Os04g0474800_circ_g.9 Os04g0474800_circ_ag.10 Os04g0474800_circ_ag.11 Os04g0474800_circ_ag.12 Os04g0474800_circ_g.13
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATGAGAGAACTGAATTTCTTCTGCACAGTTACATATGCATGGAACTGGAAGCTTTCTTTGC
TGTAGGAGTGGAAGGGAAGTGGAAGCTTAACagtagcattgcctttctgtgtgaatctgtacca
acgtattctcggtggagaaaagttgcacaaatctgtttgtagttttgctccttttcctttttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTAGCATTGCCTTTCTGTGTGAATCTGTACCAACGTATTCTCGGTGGAGAAAAGTTGCACAAA
TCTGTTTGTAGTTTTGCTCCTTTTCCTTTTTGTTCATGAGAGAACTGAATTTCTTCTGCACAGT
TACATATGCATGGAACTGGAAGCTTTCTTTGCTGTAGGAGTGGAAGGGAAGTGGAAGCTTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.147905934
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017